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Mutant Information

Mutant Name	FN3411-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3411-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 39202548 C-T Hetero INTERGENIC
SBS Chr2 8658498 A-G Homo INTERGENIC
SBS Chr2 28139369 G-T Hetero INTERGENIC
SBS Chr2 33179602 T-A Hetero INTERGENIC
SBS Chr2 33276704 C-A Hetero SPLICE_SITE_DONOR OsKitaake02g342600
SBS Chr3 13733382 A-T Hetero INTERGENIC
SBS Chr3 13733383 C-T Hetero INTERGENIC
SBS Chr3 14215249 T-G Hetero INTRON
SBS Chr3 14644229 C-A Hetero INTERGENIC
SBS Chr3 19498422 T-A Hetero INTERGENIC
SBS Chr3 31715792 G-A Hetero INTERGENIC
SBS Chr4 9122597 G-A Hetero INTERGENIC
SBS Chr4 20259891 C-A Hetero UTR_3_PRIME
SBS Chr4 22168296 T-A Hetero INTERGENIC
SBS Chr7 12489197 G-A Homo INTERGENIC
SBS Chr7 27285869 T-A Hetero INTERGENIC
SBS Chr8 2588500 G-A Hetero INTERGENIC
SBS Chr8 14491087 G-A Hetero SYNONYMOUS_CODING
SBS Chr8 25296843 G-C Hetero INTERGENIC
SBS Chr9 7370784 A-T Homo INTERGENIC
SBS Chr9 15141794 A-C Hetero SYNONYMOUS_CODING
SBS Chr9 17608456 C-T Hetero INTERGENIC
SBS Chr9 20028241 A-C Hetero INTERGENIC
SBS Chr10 7960533 G-A Hetero INTERGENIC
SBS Chr10 18124107 A-T Hetero INTERGENIC
SBS Chr10 18797966 T-C Hetero UTR_5_PRIME
SBS Chr11 2830900 A-G Homo INTRON
SBS Chr11 3762058 G-T Homo INTERGENIC
SBS Chr11 9236425 C-G Hetero INTERGENIC
SBS Chr11 11324459 T-A Hetero INTERGENIC
SBS Chr12 14279134 A-G Hetero INTERGENIC
SBS Chr12 14901787 C-A Hetero INTERGENIC

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 1538427 1538433 6
Deletion Chr2 1558623 1558624 1
Deletion Chr7 3672996 3673015 19
Deletion Chr10 4921001 4980000 58999 5
Deletion Chr2 8403361 8403367 6
Deletion Chr2 11446817 11446823 6
Deletion Chr8 22110001 22168000 57999 9
Deletion Chr11 26301804 26301813 9

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 8493493 8493496 2
Insertion Chr3 36881339 36881341 1
Insertion Chr4 33127121 33127124 2
Insertion Chr12 22252506 22252508 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 5512085 6109017 OsKitaake08g065600
Inversion Chr8 5512094 6109028 OsKitaake08g065600

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 4776980 Chr1 40473024
Translocation Chr11 24807848 Chr5 25102331
Translocation Chr11 24807857 Chr5 25102320

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	39202548	C-T	Hetero	INTERGENIC
SBS	Chr2	8658498	A-G	Homo	INTERGENIC
SBS	Chr2	28139369	G-T	Hetero	INTERGENIC
SBS	Chr2	33179602	T-A	Hetero	INTERGENIC
SBS	Chr2	33276704	C-A	Hetero	SPLICE_SITE_DONOR	OsKitaake02g342600
SBS	Chr3	13733382	A-T	Hetero	INTERGENIC
SBS	Chr3	13733383	C-T	Hetero	INTERGENIC
SBS	Chr3	14215249	T-G	Hetero	INTRON
SBS	Chr3	14644229	C-A	Hetero	INTERGENIC
SBS	Chr3	19498422	T-A	Hetero	INTERGENIC
SBS	Chr3	31715792	G-A	Hetero	INTERGENIC
SBS	Chr4	9122597	G-A	Hetero	INTERGENIC
SBS	Chr4	20259891	C-A	Hetero	UTR_3_PRIME
SBS	Chr4	22168296	T-A	Hetero	INTERGENIC
SBS	Chr7	12489197	G-A	Homo	INTERGENIC
SBS	Chr7	27285869	T-A	Hetero	INTERGENIC
SBS	Chr8	2588500	G-A	Hetero	INTERGENIC
SBS	Chr8	14491087	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr8	25296843	G-C	Hetero	INTERGENIC
SBS	Chr9	7370784	A-T	Homo	INTERGENIC
SBS	Chr9	15141794	A-C	Hetero	SYNONYMOUS_CODING
SBS	Chr9	17608456	C-T	Hetero	INTERGENIC
SBS	Chr9	20028241	A-C	Hetero	INTERGENIC
SBS	Chr10	7960533	G-A	Hetero	INTERGENIC
SBS	Chr10	18124107	A-T	Hetero	INTERGENIC
SBS	Chr10	18797966	T-C	Hetero	UTR_5_PRIME
SBS	Chr11	2830900	A-G	Homo	INTRON
SBS	Chr11	3762058	G-T	Homo	INTERGENIC
SBS	Chr11	9236425	C-G	Hetero	INTERGENIC
SBS	Chr11	11324459	T-A	Hetero	INTERGENIC
SBS	Chr12	14279134	A-G	Hetero	INTERGENIC
SBS	Chr12	14901787	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	1538427	1538433	6
Deletion	Chr2	1558623	1558624	1
Deletion	Chr7	3672996	3673015	19
Deletion	Chr10	4921001	4980000	58999	5
Deletion	Chr2	8403361	8403367	6
Deletion	Chr2	11446817	11446823	6
Deletion	Chr8	22110001	22168000	57999	9
Deletion	Chr11	26301804	26301813	9

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	5512085	6109017	OsKitaake08g065600
Inversion	Chr8	5512094	6109028	OsKitaake08g065600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes