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Mutant Information

Mutant Name	FN3413-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3413-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2155292 G-C Hetero INTERGENIC
SBS Chr1 9941550 A-G Hetero INTERGENIC
SBS Chr1 25220980 G-A Hetero INTERGENIC
SBS Chr1 28394458 G-A Hetero INTERGENIC
SBS Chr1 31180643 C-T Homo INTERGENIC
SBS Chr1 36231303 G-A Homo INTERGENIC
SBS Chr1 38788025 G-T Homo INTRON
SBS Chr1 41437608 A-G Hetero INTERGENIC
SBS Chr1 41491428 G-T Hetero INTERGENIC
SBS Chr2 19951982 G-T Hetero INTERGENIC
SBS Chr2 24777552 A-T Hetero INTERGENIC
SBS Chr2 36007514 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g379000
SBS Chr3 12992249 G-A Homo INTRON
SBS Chr3 13266355 C-G Homo INTERGENIC
SBS Chr3 34012025 G-A Hetero INTERGENIC
SBS Chr4 15921815 C-T Hetero INTERGENIC
SBS Chr5 14646913 C-T Hetero UTR_3_PRIME
SBS Chr5 18223925 G-A Hetero INTRON
SBS Chr5 23890492 A-G Homo INTERGENIC
SBS Chr6 15341187 T-C Homo INTERGENIC
SBS Chr6 17170938 A-T Homo INTERGENIC
SBS Chr7 8231842 A-G Hetero INTRON
SBS Chr7 11041836 C-T Homo INTERGENIC
SBS Chr7 23850659 C-G Hetero INTERGENIC
SBS Chr7 24077897 T-G Hetero INTERGENIC
SBS Chr8 6829246 C-T Hetero UTR_3_PRIME
SBS Chr11 7663071 G-A Homo INTERGENIC
SBS Chr11 11490387 C-G Hetero INTERGENIC
SBS Chr11 27320902 C-T Homo INTERGENIC
SBS Chr12 3774808 G-A Hetero SYNONYMOUS_CODING
SBS Chr12 8390801 G-A Hetero SYNONYMOUS_CODING
SBS Chr12 10166644 C-T Hetero INTERGENIC
SBS Chr12 21137722 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake12g165900

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 1162763 1162770 7
Deletion Chr10 5044921 5044926 5
Deletion Chr11 7661552 7661553 1 OsKitaake11g085800
Deletion Chr9 10724099 10724100 1
Deletion Chr11 10944483 10944492 9
Deletion Chr7 13629076 13629080 4
Deletion Chr4 15990119 15990125 6
Deletion Chr11 19029008 19029016 8
Deletion Chr3 19852866 19852876 10
Deletion Chr8 20490742 20490743 1
Deletion Chr4 21706717 21706722 5
Deletion Chr5 25733618 25733636 18
Deletion Chr6 29136797 29136799 2
Deletion Chr4 35278010 35278014 4 OsKitaake04g298000

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 7162912 7162916 3
Insertion Chr3 30423311 30423318 6
Insertion Chr5 25385189 25385192 2
Insertion Chr7 6982669 6982671 1
Insertion Chr9 17028740 17028743 2

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 12203489 Chr7 17850361 OsKitaake08g106000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2155292	G-C	Hetero	INTERGENIC
SBS	Chr1	9941550	A-G	Hetero	INTERGENIC
SBS	Chr1	25220980	G-A	Hetero	INTERGENIC
SBS	Chr1	28394458	G-A	Hetero	INTERGENIC
SBS	Chr1	31180643	C-T	Homo	INTERGENIC
SBS	Chr1	36231303	G-A	Homo	INTERGENIC
SBS	Chr1	38788025	G-T	Homo	INTRON
SBS	Chr1	41437608	A-G	Hetero	INTERGENIC
SBS	Chr1	41491428	G-T	Hetero	INTERGENIC
SBS	Chr2	19951982	G-T	Hetero	INTERGENIC
SBS	Chr2	24777552	A-T	Hetero	INTERGENIC
SBS	Chr2	36007514	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g379000
SBS	Chr3	12992249	G-A	Homo	INTRON
SBS	Chr3	13266355	C-G	Homo	INTERGENIC
SBS	Chr3	34012025	G-A	Hetero	INTERGENIC
SBS	Chr4	15921815	C-T	Hetero	INTERGENIC
SBS	Chr5	14646913	C-T	Hetero	UTR_3_PRIME
SBS	Chr5	18223925	G-A	Hetero	INTRON
SBS	Chr5	23890492	A-G	Homo	INTERGENIC
SBS	Chr6	15341187	T-C	Homo	INTERGENIC
SBS	Chr6	17170938	A-T	Homo	INTERGENIC
SBS	Chr7	8231842	A-G	Hetero	INTRON
SBS	Chr7	11041836	C-T	Homo	INTERGENIC
SBS	Chr7	23850659	C-G	Hetero	INTERGENIC
SBS	Chr7	24077897	T-G	Hetero	INTERGENIC
SBS	Chr8	6829246	C-T	Hetero	UTR_3_PRIME
SBS	Chr11	7663071	G-A	Homo	INTERGENIC
SBS	Chr11	11490387	C-G	Hetero	INTERGENIC
SBS	Chr11	27320902	C-T	Homo	INTERGENIC
SBS	Chr12	3774808	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr12	8390801	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr12	10166644	C-T	Hetero	INTERGENIC
SBS	Chr12	21137722	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g165900

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	1162763	1162770	7
Deletion	Chr10	5044921	5044926	5
Deletion	Chr11	7661552	7661553	1	OsKitaake11g085800
Deletion	Chr9	10724099	10724100	1
Deletion	Chr11	10944483	10944492	9
Deletion	Chr7	13629076	13629080	4
Deletion	Chr4	15990119	15990125	6
Deletion	Chr11	19029008	19029016	8
Deletion	Chr3	19852866	19852876	10
Deletion	Chr8	20490742	20490743	1
Deletion	Chr4	21706717	21706722	5
Deletion	Chr5	25733618	25733636	18
Deletion	Chr6	29136797	29136799	2
Deletion	Chr4	35278010	35278014	4	OsKitaake04g298000

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	12203489	Chr7	17850361	OsKitaake08g106000

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes