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Mutant Information

Mutant Name	FN3415-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3415-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4167076 T-A Homo INTERGENIC
SBS Chr1 27109037 G-A Hetero SYNONYMOUS_CODING
SBS Chr1 39425942 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g425000
SBS Chr2 7090416 C-T Hetero INTERGENIC
SBS Chr2 7460105 C-T Hetero INTERGENIC
SBS Chr2 23031561 C-T Hetero INTERGENIC
SBS Chr2 26772435 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake02g267600
SBS Chr2 35132769 G-A Hetero INTERGENIC
SBS Chr3 1336655 T-A Hetero INTERGENIC
SBS Chr3 20633758 G-C Homo INTERGENIC
SBS Chr3 34913824 T-C Homo INTRON
SBS Chr4 14488786 C-T Hetero INTERGENIC
SBS Chr4 19157141 C-A Homo INTERGENIC
SBS Chr4 21494613 G-T Homo UTR_3_PRIME
SBS Chr4 23279542 C-G Hetero SYNONYMOUS_CODING
SBS Chr5 10648074 G-A Homo INTERGENIC
SBS Chr5 23209669 G-A Hetero INTERGENIC
SBS Chr5 23502081 C-T Hetero INTERGENIC
SBS Chr6 11918142 T-C Homo INTRON
SBS Chr6 17046866 C-T Homo UTR_5_PRIME
SBS Chr7 6706511 T-C Hetero INTERGENIC
SBS Chr7 10498603 G-A Hetero INTERGENIC
SBS Chr7 17794775 C-G Hetero INTERGENIC
SBS Chr9 9722859 T-G Homo INTERGENIC
SBS Chr9 13261748 A-G Hetero INTERGENIC
SBS Chr10 8281808 G-C Hetero INTERGENIC
SBS Chr10 8441770 C-T Hetero INTERGENIC
SBS Chr10 8441771 G-A Hetero INTERGENIC
SBS Chr10 18774491 T-C Hetero INTERGENIC
SBS Chr11 13186404 T-C Hetero INTERGENIC
SBS Chr11 20019430 G-T Hetero INTERGENIC
SBS Chr11 26859282 T-A Hetero INTERGENIC
SBS Chr12 14231385 T-A Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 346965 346980 15
Deletion Chr5 1325535 1325541 6
Deletion Chr9 2277762 2277763 1
Deletion Chr2 3044936 3044940 4
Deletion Chr4 4104636 4104646 10
Deletion Chr5 9118950 9118970 20
Deletion Chr8 10008985 10009015 30 OsKitaake08g092300
Deletion Chr8 10049648 10049666 18
Deletion Chr4 13938092 13938093 1
Deletion Chr5 15124360 15124363 3
Deletion Chr6 19028230 19028232 2
Deletion Chr6 23066863 23066870 7
Deletion Chr1 23675001 23764000 88999 8
Deletion Chr1 23891001 24139000 247999 23
Deletion Chr8 24116612 24116620 8
Deletion Chr1 25202872 25202876 4
Deletion Chr6 26764688 26764690 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 9606641 9606644 2
Insertion Chr9 15131540 15131543 2 OsKitaake09g105350
Insertion Chr10 20984312 20984315 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 23683130 23787386 OsKitaake01g228200
Inversion Chr1 23760935 23787396 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4167076	T-A	Homo	INTERGENIC
SBS	Chr1	27109037	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr1	39425942	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g425000
SBS	Chr2	7090416	C-T	Hetero	INTERGENIC
SBS	Chr2	7460105	C-T	Hetero	INTERGENIC
SBS	Chr2	23031561	C-T	Hetero	INTERGENIC
SBS	Chr2	26772435	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g267600
SBS	Chr2	35132769	G-A	Hetero	INTERGENIC
SBS	Chr3	1336655	T-A	Hetero	INTERGENIC
SBS	Chr3	20633758	G-C	Homo	INTERGENIC
SBS	Chr3	34913824	T-C	Homo	INTRON
SBS	Chr4	14488786	C-T	Hetero	INTERGENIC
SBS	Chr4	19157141	C-A	Homo	INTERGENIC
SBS	Chr4	21494613	G-T	Homo	UTR_3_PRIME
SBS	Chr4	23279542	C-G	Hetero	SYNONYMOUS_CODING
SBS	Chr5	10648074	G-A	Homo	INTERGENIC
SBS	Chr5	23209669	G-A	Hetero	INTERGENIC
SBS	Chr5	23502081	C-T	Hetero	INTERGENIC
SBS	Chr6	11918142	T-C	Homo	INTRON
SBS	Chr6	17046866	C-T	Homo	UTR_5_PRIME
SBS	Chr7	6706511	T-C	Hetero	INTERGENIC
SBS	Chr7	10498603	G-A	Hetero	INTERGENIC
SBS	Chr7	17794775	C-G	Hetero	INTERGENIC
SBS	Chr9	9722859	T-G	Homo	INTERGENIC
SBS	Chr9	13261748	A-G	Hetero	INTERGENIC
SBS	Chr10	8281808	G-C	Hetero	INTERGENIC
SBS	Chr10	8441770	C-T	Hetero	INTERGENIC
SBS	Chr10	8441771	G-A	Hetero	INTERGENIC
SBS	Chr10	18774491	T-C	Hetero	INTERGENIC
SBS	Chr11	13186404	T-C	Hetero	INTERGENIC
SBS	Chr11	20019430	G-T	Hetero	INTERGENIC
SBS	Chr11	26859282	T-A	Hetero	INTERGENIC
SBS	Chr12	14231385	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	346965	346980	15
Deletion	Chr5	1325535	1325541	6
Deletion	Chr9	2277762	2277763	1
Deletion	Chr2	3044936	3044940	4
Deletion	Chr4	4104636	4104646	10
Deletion	Chr5	9118950	9118970	20
Deletion	Chr8	10008985	10009015	30	OsKitaake08g092300
Deletion	Chr8	10049648	10049666	18
Deletion	Chr4	13938092	13938093	1
Deletion	Chr5	15124360	15124363	3
Deletion	Chr6	19028230	19028232	2
Deletion	Chr6	23066863	23066870	7
Deletion	Chr1	23675001	23764000	88999	8
Deletion	Chr1	23891001	24139000	247999	23
Deletion	Chr8	24116612	24116620	8
Deletion	Chr1	25202872	25202876	4
Deletion	Chr6	26764688	26764690	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	23683130	23787386	OsKitaake01g228200
Inversion	Chr1	23760935	23787396	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes