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Mutant Information

Mutant Name	FN3416-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3416-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 50

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5636624 C-T Homo INTERGENIC
SBS Chr1 16931935 C-T Hetero INTERGENIC
SBS Chr1 39215493 A-G Homo INTERGENIC
SBS Chr1 41728547 T-A Hetero INTERGENIC
SBS Chr2 5541426 C-T Hetero INTERGENIC
SBS Chr2 9596920 C-T Hetero INTERGENIC
SBS Chr2 16208909 G-A Hetero INTERGENIC
SBS Chr2 21557694 G-A Homo INTERGENIC
SBS Chr2 27608249 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake02g277500
SBS Chr2 34626078 C-T Hetero INTERGENIC
SBS Chr2 35715875 C-T Hetero INTERGENIC
SBS Chr3 8053389 C-T Hetero INTRON
SBS Chr3 11535502 C-T Hetero INTERGENIC
SBS Chr3 27198166 C-G Hetero INTRON
SBS Chr3 32338698 C-T Hetero INTERGENIC
SBS Chr4 9191083 A-C Hetero INTERGENIC
SBS Chr4 9427626 C-T Hetero INTERGENIC
SBS Chr4 11479140 C-T Homo INTERGENIC
SBS Chr4 17238736 A-T Hetero INTERGENIC
SBS Chr4 17604673 C-A Hetero INTERGENIC
SBS Chr4 21203531 C-T Hetero INTERGENIC
SBS Chr5 1929492 G-A Hetero INTERGENIC
SBS Chr5 17840643 T-A Homo INTRON
SBS Chr5 17840646 C-T Homo INTRON
SBS Chr5 17840648 C-T Homo INTRON
SBS Chr6 8470806 G-A Hetero INTERGENIC
SBS Chr6 11568978 C-A Hetero INTERGENIC
SBS Chr6 11581331 G-C Homo INTERGENIC
SBS Chr6 14116778 G-A Hetero INTERGENIC
SBS Chr6 21893777 T-G Hetero INTERGENIC
SBS Chr6 24718468 G-A Hetero INTERGENIC
SBS Chr7 14396634 C-T Hetero INTERGENIC
SBS Chr8 17105887 G-A Hetero INTERGENIC
SBS Chr8 28826206 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake08g248500
SBS Chr9 4258114 T-C Hetero INTERGENIC
SBS Chr9 7466808 G-A Hetero INTERGENIC
SBS Chr10 531102 T-C Hetero INTERGENIC
SBS Chr10 936920 C-T Hetero INTERGENIC
SBS Chr10 7538141 G-A Hetero INTERGENIC
SBS Chr10 9316616 A-T Hetero INTERGENIC
SBS Chr10 16416782 C-T Hetero INTERGENIC
SBS Chr10 19896868 A-G Homo INTERGENIC
SBS Chr11 7545866 C-T Hetero INTERGENIC
SBS Chr11 8534775 C-T Hetero INTERGENIC
SBS Chr11 16875243 G-A Hetero INTERGENIC
SBS Chr12 4360532 G-A Hetero INTERGENIC
SBS Chr12 10090115 T-C Hetero INTERGENIC
SBS Chr12 11619095 C-G Hetero INTERGENIC
SBS Chr12 15497528 A-T Hetero INTERGENIC
SBS Chr12 25513013 C-T Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 508382 508386 4
Deletion Chr2 2310287 2310292 5 OsKitaake02g034300
Deletion Chr1 5513860 5513861 1
Deletion Chr5 7081522 7081524 2
Deletion Chr10 7348127 7348137 10
Deletion Chr4 16066343 16066344 1
Deletion Chr9 17454295 17454303 8
Deletion Chr1 18477690 18477698 8
Deletion Chr4 18626001 18717000 90999 4
Deletion Chr4 19821231 19821233 2
Deletion Chr12 21253565 21253567 2
Deletion Chr2 21754154 21754161 7
Deletion Chr7 25548850 25548852 2
Deletion Chr4 25615186 25615187 1

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 27369214 27369221 6
Insertion Chr4 14561603 14561606 2
Insertion Chr5 2837653 2837656 2
Insertion Chr7 19375234 19375237 2
Insertion Chr11 13314445 13314448 2
Insertion Chr8 1411838 1411840 1

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 6242163 Chr1 42043221 OsKitaake05g064300
Translocation Chr5 6242169 Chr1 42043222 OsKitaake05g064300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5636624	C-T	Homo	INTERGENIC
SBS	Chr1	16931935	C-T	Hetero	INTERGENIC
SBS	Chr1	39215493	A-G	Homo	INTERGENIC
SBS	Chr1	41728547	T-A	Hetero	INTERGENIC
SBS	Chr2	5541426	C-T	Hetero	INTERGENIC
SBS	Chr2	9596920	C-T	Hetero	INTERGENIC
SBS	Chr2	16208909	G-A	Hetero	INTERGENIC
SBS	Chr2	21557694	G-A	Homo	INTERGENIC
SBS	Chr2	27608249	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g277500
SBS	Chr2	34626078	C-T	Hetero	INTERGENIC
SBS	Chr2	35715875	C-T	Hetero	INTERGENIC
SBS	Chr3	8053389	C-T	Hetero	INTRON
SBS	Chr3	11535502	C-T	Hetero	INTERGENIC
SBS	Chr3	27198166	C-G	Hetero	INTRON
SBS	Chr3	32338698	C-T	Hetero	INTERGENIC
SBS	Chr4	9191083	A-C	Hetero	INTERGENIC
SBS	Chr4	9427626	C-T	Hetero	INTERGENIC
SBS	Chr4	11479140	C-T	Homo	INTERGENIC
SBS	Chr4	17238736	A-T	Hetero	INTERGENIC
SBS	Chr4	17604673	C-A	Hetero	INTERGENIC
SBS	Chr4	21203531	C-T	Hetero	INTERGENIC
SBS	Chr5	1929492	G-A	Hetero	INTERGENIC
SBS	Chr5	17840643	T-A	Homo	INTRON
SBS	Chr5	17840646	C-T	Homo	INTRON
SBS	Chr5	17840648	C-T	Homo	INTRON
SBS	Chr6	8470806	G-A	Hetero	INTERGENIC
SBS	Chr6	11568978	C-A	Hetero	INTERGENIC
SBS	Chr6	11581331	G-C	Homo	INTERGENIC
SBS	Chr6	14116778	G-A	Hetero	INTERGENIC
SBS	Chr6	21893777	T-G	Hetero	INTERGENIC
SBS	Chr6	24718468	G-A	Hetero	INTERGENIC
SBS	Chr7	14396634	C-T	Hetero	INTERGENIC
SBS	Chr8	17105887	G-A	Hetero	INTERGENIC
SBS	Chr8	28826206	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g248500
SBS	Chr9	4258114	T-C	Hetero	INTERGENIC
SBS	Chr9	7466808	G-A	Hetero	INTERGENIC
SBS	Chr10	531102	T-C	Hetero	INTERGENIC
SBS	Chr10	936920	C-T	Hetero	INTERGENIC
SBS	Chr10	7538141	G-A	Hetero	INTERGENIC
SBS	Chr10	9316616	A-T	Hetero	INTERGENIC
SBS	Chr10	16416782	C-T	Hetero	INTERGENIC
SBS	Chr10	19896868	A-G	Homo	INTERGENIC
SBS	Chr11	7545866	C-T	Hetero	INTERGENIC
SBS	Chr11	8534775	C-T	Hetero	INTERGENIC
SBS	Chr11	16875243	G-A	Hetero	INTERGENIC
SBS	Chr12	4360532	G-A	Hetero	INTERGENIC
SBS	Chr12	10090115	T-C	Hetero	INTERGENIC
SBS	Chr12	11619095	C-G	Hetero	INTERGENIC
SBS	Chr12	15497528	A-T	Hetero	INTERGENIC
SBS	Chr12	25513013	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	508382	508386	4
Deletion	Chr2	2310287	2310292	5	OsKitaake02g034300
Deletion	Chr1	5513860	5513861	1
Deletion	Chr5	7081522	7081524	2
Deletion	Chr10	7348127	7348137	10
Deletion	Chr4	16066343	16066344	1
Deletion	Chr9	17454295	17454303	8
Deletion	Chr1	18477690	18477698	8
Deletion	Chr4	18626001	18717000	90999	4
Deletion	Chr4	19821231	19821233	2
Deletion	Chr12	21253565	21253567	2
Deletion	Chr2	21754154	21754161	7
Deletion	Chr7	25548850	25548852	2
Deletion	Chr4	25615186	25615187	1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	6242163	Chr1	42043221	OsKitaake05g064300
Translocation	Chr5	6242169	Chr1	42043222	OsKitaake05g064300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes