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| Mutant Information |
|---|
| Mutant Name | FN3418-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3418-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 33
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 19058634 | C-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 28600331 | T-A | Homo | INTERGENIC | |
| SBS | Chr1 | 31462272 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 8799735 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 7090968 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 15461025 | G-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 19215041 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 19917788 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 28576902 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 35574650 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 15024361 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 4800249 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 8873341 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 9142877 | C-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 25356936 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake06g225300 |
| SBS | Chr7 | 24774751 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake07g220800 |
| SBS | Chr8 | 8294532 | A-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 14801291 | T-C | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr9 | 20134560 | G-A | Hetero | UTR_3_PRIME | |
| SBS | Chr10 | 5552949 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 5552950 | T-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 11931094 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 16858214 | A-G | Hetero | INTRON | |
| SBS | Chr10 | 17443228 | T-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 18724442 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 18724443 | G-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 18724444 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 9219792 | C-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 11069080 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 8790653 | A-G | Homo | INTERGENIC | |
| SBS | Chr12 | 16705633 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 16759971 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 17786591 | G-A | Hetero | INTERGENIC |
Deletions: 6
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr3 | 5380488 | 5380506 | 18 | |
| Deletion | Chr5 | 18729332 | 18729340 | 8 | |
| Deletion | Chr7 | 18756649 | 18756651 | 2 | |
| Deletion | Chr2 | 19675001 | 19768000 | 92999 | 9 |
| Deletion | Chr5 | 26228907 | 26228919 | 12 | OsKitaake05g231800 |
| Deletion | Chr1 | 39593456 | 39593460 | 4 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 9890301 | 9890364 | 62 |
Inversions: 5
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr9 | 10536919 | 11110419 | OsKitaake09g065900 |
| Inversion | Chr9 | 10536924 | 11110421 | OsKitaake09g065900 |
| Inversion | Chr10 | 14439630 | 14519621 | |
| Inversion | Chr2 | 19636818 | 19673205 | |
| Inversion | Chr2 | 19636834 | 20419357 |