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| Mutant Information |
|---|
| Mutant Name | FN3419-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3419-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 38
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 607049 | C-T | Hetero | INTRON | |
| SBS | Chr1 | 3482723 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 4569046 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 25905406 | A-T | Homo | INTERGENIC | |
| SBS | Chr2 | 25724156 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 32765343 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 33834899 | T-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 24761858 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 32493708 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 8305283 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 21720417 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 28918020 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 1646340 | G-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 3776762 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 24820896 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 21747181 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 30734696 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 1309509 | A-T | Homo | INTERGENIC | |
| SBS | Chr7 | 7740803 | G-A | Homo | INTRON | |
| SBS | Chr7 | 13264366 | C-T | Homo | INTRON | |
| SBS | Chr7 | 14678785 | T-A | Homo | INTERGENIC | |
| SBS | Chr7 | 20627909 | G-C | Homo | INTRON | |
| SBS | Chr7 | 20669797 | G-A | Homo | INTRON | |
| SBS | Chr7 | 23995631 | A-G | Homo | INTERGENIC | |
| SBS | Chr7 | 28256820 | G-C | Homo | INTRON | |
| SBS | Chr8 | 7015826 | C-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 26132223 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 27507695 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 2398071 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 2398072 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 16792548 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 5391197 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 6121764 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 21159285 | A-T | Hetero | INTRON | |
| SBS | Chr12 | 3858864 | T-C | Homo | INTERGENIC | |
| SBS | Chr12 | 14242551 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 14242552 | A-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 17163826 | G-A | Hetero | INTRON |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 1247052 | 1247055 | 3 | OsKitaake12g018200 |
| Deletion | Chr12 | 2372074 | 2372085 | 11 | |
| Deletion | Chr6 | 4374241 | 4374249 | 8 | OsKitaake06g060200 |
| Deletion | Chr4 | 8543001 | 8652000 | 108999 | 5 |
| Deletion | Chr4 | 13171382 | 13171383 | 1 | |
| Deletion | Chr1 | 13334234 | 13334241 | 7 | |
| Deletion | Chr7 | 20954461 | 20954462 | 1 | OsKitaake07g173000 |
| Deletion | Chr1 | 21921985 | 21921999 | 14 | |
| Deletion | Chr4 | 23102623 | 23102624 | 1 | |
| Deletion | Chr2 | 24686389 | 24686394 | 5 | |
| Deletion | Chr2 | 25867181 | 25867188 | 7 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 5567281 | Chr3 | 14532243 | |
| Translocation | Chr11 | 5567289 | Chr3 | 14563333 | OsKitaake03g189700 |