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| Mutant Information |
|---|
| Mutant Name | FN3420-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3420-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 28
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 582690 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g114400 |
| SBS | Chr1 | 4055385 | T-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 4512901 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr1 | 15331956 | G-A | Homo | INTRON | |
| SBS | Chr2 | 15319871 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g159700 |
| SBS | Chr2 | 18816617 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 31177624 | G-A | Hetero | INTRON | |
| SBS | Chr2 | 33370988 | C-T | Homo | INTRON | |
| SBS | Chr2 | 36446314 | G-A | Homo | UTR_3_PRIME | |
| SBS | Chr2 | 36683851 | G-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 37077791 | A-G | Homo | UTR_3_PRIME | |
| SBS | Chr3 | 31145641 | T-A | Homo | INTERGENIC | |
| SBS | Chr4 | 7399829 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 21736300 | G-T | Homo | INTERGENIC | |
| SBS | Chr4 | 33734405 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 9275886 | C-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 16735908 | A-G | Hetero | INTRON | |
| SBS | Chr5 | 27835517 | G-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr6 | 12124487 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 28134271 | G-A | Hetero | INTRON | |
| SBS | Chr7 | 4425750 | G-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake07g055600 |
| SBS | Chr7 | 27964390 | T-C | Hetero | INTRON | |
| SBS | Chr8 | 8522124 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 23581026 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 18952311 | G-T | Hetero | INTRON | |
| SBS | Chr11 | 28135165 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 5573832 | C-T | Hetero | INTRON | |
| SBS | Chr12 | 23818551 | C-A | Homo | INTERGENIC |
Deletions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 1073332 | 1073333 | 1 | |
| Deletion | Chr1 | 22178328 | 22178330 | 2 | |
| Deletion | Chr12 | 26110914 | 26110917 | 3 | |
| Deletion | Chr5 | 29198039 | 29198049 | 10 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 10699739 | 10699742 | 2 | |
| Insertion | Chr3 | 11386 | 11456 | 69 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr5 | 9120222 | 9274216 | |
| Inversion | Chr5 | 9124578 | 9274350 | |
| Inversion | Chr7 | 20849266 | 21025126 | 2 |
| Inversion | Chr7 | 20849295 | 20872068 | OsKitaake07g172000 |
Translocations: 12
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 992148 | Chr1 | 21409496 | |
| Translocation | Chr10 | 992155 | Chr1 | 21411224 | |
| Translocation | Chr5 | 2430847 | Chr1 | 21406486 | OsKitaake05g027600 |
| Translocation | Chr5 | 2430849 | Chr1 | 21406690 | OsKitaake05g027600 |
| Translocation | Chr8 | 3796045 | Chr1 | 4847200 | OsKitaake01g064800 |
| Translocation | Chr8 | 3809008 | Chr1 | 4847195 | OsKitaake01g064800 |
| Translocation | Chr12 | 6006585 | Chr7 | 21029023 | |
| Translocation | Chr12 | 6006591 | Chr7 | 21025149 | OsKitaake07g173500 |
| Translocation | Chr2 | 13601538 | Chr1 | 21406891 | |
| Translocation | Chr12 | 16455818 | Chr3 | 29163152 | |
| Translocation | Chr7 | 21030408 | Chr1 | 21406416 | OsKitaake07g173550 |
| Translocation | Chr7 | 21031009 | Chr1 | 21411247 | OsKitaake07g173550 |