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Mutant Information

Mutant Name	FN3421-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3421-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 49

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10598031 C-T Hetero INTERGENIC
SBS Chr1 26310421 C-T Hetero INTERGENIC
SBS Chr1 28917824 G-A Hetero INTERGENIC
SBS Chr1 30117998 T-C Homo INTRON
SBS Chr1 31214006 G-T Homo INTERGENIC
SBS Chr1 32250130 A-G Hetero INTERGENIC
SBS Chr2 7975223 T-G Homo INTERGENIC
SBS Chr2 23123441 C-G Hetero INTERGENIC
SBS Chr2 26243432 G-T Hetero INTERGENIC
SBS Chr3 1215478 G-T Hetero STOP_GAINED OsKitaake03g018750
SBS Chr3 1541411 C-T Hetero INTERGENIC
SBS Chr3 4302934 T-C Hetero INTRON
SBS Chr3 21907174 G-A Homo INTERGENIC
SBS Chr3 23791540 G-A Homo INTERGENIC
SBS Chr3 30536788 A-T Hetero INTERGENIC
SBS Chr3 33314519 G-A Hetero INTERGENIC
SBS Chr4 2001684 C-T Hetero INTERGENIC
SBS Chr4 7549100 G-A Hetero INTERGENIC
SBS Chr4 10133780 G-A Hetero INTERGENIC
SBS Chr4 10844745 C-T Hetero INTERGENIC
SBS Chr4 11183157 C-T Hetero INTERGENIC
SBS Chr4 12086713 A-C Hetero INTRON
SBS Chr4 33485712 G-A Hetero INTERGENIC
SBS Chr5 4993128 T-A Hetero INTERGENIC
SBS Chr5 8702098 G-A Hetero INTERGENIC
SBS Chr5 16155888 C-A Hetero INTERGENIC
SBS Chr5 16857854 C-T Homo INTERGENIC
SBS Chr5 17703701 G-A Homo INTERGENIC
SBS Chr5 22788813 G-T Hetero INTERGENIC
SBS Chr5 29812916 G-A Hetero INTRON
SBS Chr6 6425502 C-T Hetero INTERGENIC
SBS Chr6 8723145 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g106500
SBS Chr6 12495806 G-A Hetero INTERGENIC
SBS Chr7 1361195 C-T Hetero INTERGENIC
SBS Chr7 13450956 C-A Hetero INTERGENIC
SBS Chr8 9364369 C-G Hetero INTERGENIC
SBS Chr8 13883664 G-A Hetero INTERGENIC
SBS Chr8 26653499 A-T Homo INTERGENIC
SBS Chr9 14697385 T-C Homo INTRON
SBS Chr10 9656122 C-T Hetero INTERGENIC
SBS Chr10 10608799 C-G Hetero INTERGENIC
SBS Chr11 4940184 C-T Hetero INTERGENIC
SBS Chr11 16956620 C-T Hetero INTERGENIC
SBS Chr11 20170841 C-T Homo INTERGENIC
SBS Chr12 704067 A-G Homo INTRON
SBS Chr12 3000529 A-C Hetero INTERGENIC
SBS Chr12 10919017 G-A Hetero INTERGENIC
SBS Chr12 12143504 C-T Hetero INTERGENIC
SBS Chr12 14469404 G-T Hetero INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 6135001 6279000 143999 9
Deletion Chr1 6153265 6153277 12
Deletion Chr7 11991294 11991296 2
Deletion Chr10 12508951 12508957 6
Deletion Chr10 13772215 13772216 1
Deletion Chr6 13898060 13898151 91
Deletion Chr8 15712486 15712487 1
Deletion Chr12 17355482 17355485 3
Deletion Chr7 20465283 20465296 13
Deletion Chr11 24791162 24791166 4 OsKitaake11g201400
Deletion Chr4 26477610 26477612 2
Deletion Chr8 26604856 26604863 7
Deletion Chr8 26666292 26666323 31
Deletion Chr3 29399001 29511000 111999 9
Deletion Chr1 30043817 30043821 4
Deletion Chr1 33758497 33758502 5
Deletion Chr1 34164001 34192000 27999 3
Deletion Chr1 34251001 34260000 8999 OsKitaake01g353000

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 15422430 15422433 2
Insertion Chr8 21322688 21322691 2
Insertion Chr12 3462884 3462887 2
Insertion Chr12 12131658 12131663 4

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 13366870 13570634 2
Inversion Chr4 13366889 13570639 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 22014580 Chr4 8099462
Translocation Chr10 22015989 Chr4 8099455

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10598031	C-T	Hetero	INTERGENIC
SBS	Chr1	26310421	C-T	Hetero	INTERGENIC
SBS	Chr1	28917824	G-A	Hetero	INTERGENIC
SBS	Chr1	30117998	T-C	Homo	INTRON
SBS	Chr1	31214006	G-T	Homo	INTERGENIC
SBS	Chr1	32250130	A-G	Hetero	INTERGENIC
SBS	Chr2	7975223	T-G	Homo	INTERGENIC
SBS	Chr2	23123441	C-G	Hetero	INTERGENIC
SBS	Chr2	26243432	G-T	Hetero	INTERGENIC
SBS	Chr3	1215478	G-T	Hetero	STOP_GAINED	OsKitaake03g018750
SBS	Chr3	1541411	C-T	Hetero	INTERGENIC
SBS	Chr3	4302934	T-C	Hetero	INTRON
SBS	Chr3	21907174	G-A	Homo	INTERGENIC
SBS	Chr3	23791540	G-A	Homo	INTERGENIC
SBS	Chr3	30536788	A-T	Hetero	INTERGENIC
SBS	Chr3	33314519	G-A	Hetero	INTERGENIC
SBS	Chr4	2001684	C-T	Hetero	INTERGENIC
SBS	Chr4	7549100	G-A	Hetero	INTERGENIC
SBS	Chr4	10133780	G-A	Hetero	INTERGENIC
SBS	Chr4	10844745	C-T	Hetero	INTERGENIC
SBS	Chr4	11183157	C-T	Hetero	INTERGENIC
SBS	Chr4	12086713	A-C	Hetero	INTRON
SBS	Chr4	33485712	G-A	Hetero	INTERGENIC
SBS	Chr5	4993128	T-A	Hetero	INTERGENIC
SBS	Chr5	8702098	G-A	Hetero	INTERGENIC
SBS	Chr5	16155888	C-A	Hetero	INTERGENIC
SBS	Chr5	16857854	C-T	Homo	INTERGENIC
SBS	Chr5	17703701	G-A	Homo	INTERGENIC
SBS	Chr5	22788813	G-T	Hetero	INTERGENIC
SBS	Chr5	29812916	G-A	Hetero	INTRON
SBS	Chr6	6425502	C-T	Hetero	INTERGENIC
SBS	Chr6	8723145	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g106500
SBS	Chr6	12495806	G-A	Hetero	INTERGENIC
SBS	Chr7	1361195	C-T	Hetero	INTERGENIC
SBS	Chr7	13450956	C-A	Hetero	INTERGENIC
SBS	Chr8	9364369	C-G	Hetero	INTERGENIC
SBS	Chr8	13883664	G-A	Hetero	INTERGENIC
SBS	Chr8	26653499	A-T	Homo	INTERGENIC
SBS	Chr9	14697385	T-C	Homo	INTRON
SBS	Chr10	9656122	C-T	Hetero	INTERGENIC
SBS	Chr10	10608799	C-G	Hetero	INTERGENIC
SBS	Chr11	4940184	C-T	Hetero	INTERGENIC
SBS	Chr11	16956620	C-T	Hetero	INTERGENIC
SBS	Chr11	20170841	C-T	Homo	INTERGENIC
SBS	Chr12	704067	A-G	Homo	INTRON
SBS	Chr12	3000529	A-C	Hetero	INTERGENIC
SBS	Chr12	10919017	G-A	Hetero	INTERGENIC
SBS	Chr12	12143504	C-T	Hetero	INTERGENIC
SBS	Chr12	14469404	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	6135001	6279000	143999	9
Deletion	Chr1	6153265	6153277	12
Deletion	Chr7	11991294	11991296	2
Deletion	Chr10	12508951	12508957	6
Deletion	Chr10	13772215	13772216	1
Deletion	Chr6	13898060	13898151	91
Deletion	Chr8	15712486	15712487	1
Deletion	Chr12	17355482	17355485	3
Deletion	Chr7	20465283	20465296	13
Deletion	Chr11	24791162	24791166	4	OsKitaake11g201400
Deletion	Chr4	26477610	26477612	2
Deletion	Chr8	26604856	26604863	7
Deletion	Chr8	26666292	26666323	31
Deletion	Chr3	29399001	29511000	111999	9
Deletion	Chr1	30043817	30043821	4
Deletion	Chr1	33758497	33758502	5
Deletion	Chr1	34164001	34192000	27999	3
Deletion	Chr1	34251001	34260000	8999	OsKitaake01g353000

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	13366870	13570634	2
Inversion	Chr4	13366889	13570639	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes