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Mutant Information

Mutant Name	FN3422-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3422-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 46

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 16193659 G-A Homo INTERGENIC
SBS Chr1 22870436 A-T Hetero INTERGENIC
SBS Chr1 22883150 G-A Hetero INTERGENIC
SBS Chr1 22955263 T-A Hetero INTERGENIC
SBS Chr1 36624372 G-A Hetero INTERGENIC
SBS Chr2 1728832 A-T Homo INTERGENIC
SBS Chr2 1728839 T-A Homo INTERGENIC
SBS Chr2 4016394 C-T Hetero INTERGENIC
SBS Chr2 14306743 G-C Hetero INTERGENIC
SBS Chr2 25051186 C-T Hetero INTERGENIC
SBS Chr2 27847134 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake02g280500
SBS Chr2 35589548 G-T Hetero INTERGENIC
SBS Chr3 11513904 G-C Hetero INTERGENIC
SBS Chr4 3546914 C-T Homo INTERGENIC
SBS Chr4 3758182 G-T Hetero INTERGENIC
SBS Chr4 6611250 C-T Homo INTERGENIC
SBS Chr4 7395976 A-G Hetero INTERGENIC
SBS Chr4 9626572 G-A Hetero INTERGENIC
SBS Chr4 18736246 C-T Hetero INTRON
SBS Chr4 25360776 C-T Hetero INTERGENIC
SBS Chr4 26512465 T-C Hetero INTERGENIC
SBS Chr4 30878677 G-A Homo INTERGENIC
SBS Chr5 2172680 G-T Hetero INTERGENIC
SBS Chr5 2172681 C-A Hetero INTERGENIC
SBS Chr5 2172685 G-C Hetero INTERGENIC
SBS Chr5 15478633 C-T Hetero INTERGENIC
SBS Chr5 21159486 A-G Hetero INTERGENIC
SBS Chr6 8283984 T-A Hetero INTRON
SBS Chr6 14036344 C-A Homo INTERGENIC
SBS Chr6 20548915 C-A Homo INTRON
SBS Chr6 30724779 C-T Hetero INTERGENIC
SBS Chr7 7452413 C-T Hetero INTERGENIC
SBS Chr7 19520440 C-T Hetero INTRON
SBS Chr7 19582532 G-T Homo INTERGENIC
SBS Chr8 20931167 C-T Hetero INTERGENIC
SBS Chr8 23864106 A-T Hetero INTERGENIC
SBS Chr8 25338666 C-T Hetero INTERGENIC
SBS Chr9 2233822 T-C Hetero INTERGENIC
SBS Chr10 5206316 A-G Hetero INTERGENIC
SBS Chr10 12523272 G-A Hetero INTERGENIC
SBS Chr11 11999659 G-C Homo INTERGENIC
SBS Chr11 16257271 C-T Homo INTERGENIC
SBS Chr11 25336320 A-C Hetero UTR_3_PRIME
SBS Chr11 27555173 T-A Hetero INTERGENIC
SBS Chr12 694947 A-C Hetero INTRON
SBS Chr12 1787812 G-A Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 4266500 4266502 2
Deletion Chr1 5969764 5969773 9
Deletion Chr5 6735236 6735238 2
Deletion Chr2 9243649 9243651 2
Deletion Chr5 16536223 16536224 1
Deletion Chr1 17183567 17183887 320
Deletion Chr7 19544001 19573000 28999 3
Deletion Chr12 20616544 20616546 2
Deletion Chr9 20890731 20890733 2
Deletion Chr5 25854199 25854201 2
Deletion Chr12 26296007 26296010 3
Deletion Chr3 33666133 33666140 7

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 10696522 10696530 7
Insertion Chr3 28579750 28579753 2
Insertion Chr10 10606822 10606825 2
Insertion Chr1 17093111 17093113 1
Insertion Chr11 8637653 8637728 74

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16193659	G-A	Homo	INTERGENIC
SBS	Chr1	22870436	A-T	Hetero	INTERGENIC
SBS	Chr1	22883150	G-A	Hetero	INTERGENIC
SBS	Chr1	22955263	T-A	Hetero	INTERGENIC
SBS	Chr1	36624372	G-A	Hetero	INTERGENIC
SBS	Chr2	1728832	A-T	Homo	INTERGENIC
SBS	Chr2	1728839	T-A	Homo	INTERGENIC
SBS	Chr2	4016394	C-T	Hetero	INTERGENIC
SBS	Chr2	14306743	G-C	Hetero	INTERGENIC
SBS	Chr2	25051186	C-T	Hetero	INTERGENIC
SBS	Chr2	27847134	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g280500
SBS	Chr2	35589548	G-T	Hetero	INTERGENIC
SBS	Chr3	11513904	G-C	Hetero	INTERGENIC
SBS	Chr4	3546914	C-T	Homo	INTERGENIC
SBS	Chr4	3758182	G-T	Hetero	INTERGENIC
SBS	Chr4	6611250	C-T	Homo	INTERGENIC
SBS	Chr4	7395976	A-G	Hetero	INTERGENIC
SBS	Chr4	9626572	G-A	Hetero	INTERGENIC
SBS	Chr4	18736246	C-T	Hetero	INTRON
SBS	Chr4	25360776	C-T	Hetero	INTERGENIC
SBS	Chr4	26512465	T-C	Hetero	INTERGENIC
SBS	Chr4	30878677	G-A	Homo	INTERGENIC
SBS	Chr5	2172680	G-T	Hetero	INTERGENIC
SBS	Chr5	2172681	C-A	Hetero	INTERGENIC
SBS	Chr5	2172685	G-C	Hetero	INTERGENIC
SBS	Chr5	15478633	C-T	Hetero	INTERGENIC
SBS	Chr5	21159486	A-G	Hetero	INTERGENIC
SBS	Chr6	8283984	T-A	Hetero	INTRON
SBS	Chr6	14036344	C-A	Homo	INTERGENIC
SBS	Chr6	20548915	C-A	Homo	INTRON
SBS	Chr6	30724779	C-T	Hetero	INTERGENIC
SBS	Chr7	7452413	C-T	Hetero	INTERGENIC
SBS	Chr7	19520440	C-T	Hetero	INTRON
SBS	Chr7	19582532	G-T	Homo	INTERGENIC
SBS	Chr8	20931167	C-T	Hetero	INTERGENIC
SBS	Chr8	23864106	A-T	Hetero	INTERGENIC
SBS	Chr8	25338666	C-T	Hetero	INTERGENIC
SBS	Chr9	2233822	T-C	Hetero	INTERGENIC
SBS	Chr10	5206316	A-G	Hetero	INTERGENIC
SBS	Chr10	12523272	G-A	Hetero	INTERGENIC
SBS	Chr11	11999659	G-C	Homo	INTERGENIC
SBS	Chr11	16257271	C-T	Homo	INTERGENIC
SBS	Chr11	25336320	A-C	Hetero	UTR_3_PRIME
SBS	Chr11	27555173	T-A	Hetero	INTERGENIC
SBS	Chr12	694947	A-C	Hetero	INTRON
SBS	Chr12	1787812	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	4266500	4266502	2
Deletion	Chr1	5969764	5969773	9
Deletion	Chr5	6735236	6735238	2
Deletion	Chr2	9243649	9243651	2
Deletion	Chr5	16536223	16536224	1
Deletion	Chr1	17183567	17183887	320
Deletion	Chr7	19544001	19573000	28999	3
Deletion	Chr12	20616544	20616546	2
Deletion	Chr9	20890731	20890733	2
Deletion	Chr5	25854199	25854201	2
Deletion	Chr12	26296007	26296010	3
Deletion	Chr3	33666133	33666140	7

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes