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| Mutant Information |
|---|
| Mutant Name | FN3423-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3423-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 26
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 7214486 | G-A | Hetero | UTR_5_PRIME | |
| SBS | Chr1 | 7326870 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g091900 |
| SBS | Chr1 | 8599690 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 8599691 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 31365033 | A-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g314500 |
| SBS | Chr2 | 10861090 | A-T | Homo | INTRON | |
| SBS | Chr2 | 18444743 | T-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake02g182800 |
| SBS | Chr2 | 18444751 | G-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake02g182800 |
| SBS | Chr4 | 7786747 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 10394471 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 19238603 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 29038454 | A-T | Homo | INTERGENIC | |
| SBS | Chr4 | 34316092 | C-A | Homo | INTERGENIC | |
| SBS | Chr5 | 6264445 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 12029168 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 12029171 | C-A | Homo | INTERGENIC | |
| SBS | Chr7 | 10451014 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 22873520 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 9124905 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 980296 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 24385621 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 25096756 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 26013905 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 28252502 | T-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 16631899 | T-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 18852934 | C-G | Homo | INTERGENIC |
Deletions: 9
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 8027117 | 8027119 | 2 | |
| Deletion | Chr8 | 12313410 | 12313411 | 1 | |
| Deletion | Chr9 | 13885179 | 13885191 | 12 | OsKitaake09g093700 |
| Deletion | Chr3 | 22405128 | 22405131 | 3 | |
| Deletion | Chr3 | 25518557 | 25518561 | 4 | OsKitaake03g269500 |
| Deletion | Chr11 | 26367732 | 26367751 | 19 | |
| Deletion | Chr3 | 28188107 | 28188109 | 2 | |
| Deletion | Chr5 | 29035296 | 29035298 | 2 | OsKitaake05g274300 |
| Deletion | Chr4 | 36151884 | 36151905 | 21 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr8 | 19199759 | 19199761 | 1 | |
| Insertion | Chr5 | 30209797 | 30209800 | 2 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr1 | 5568810 | 5868700 | OsKitaake01g074600 |
| Inversion | Chr3 | 17644071 | 17959445 | |
| Inversion | Chr3 | 17644077 | 17964443 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr4 | 13348887 | Chr1 | 5868704 | 2 |
| Translocation | Chr3 | 14180115 | Chr1 | 18749508 | OsKitaake03g185000 |
| Translocation | Chr3 | 14180978 | Chr1 | 18746215 | OsKitaake03g185000 |