Search Kitaake

Mutant Information

Mutant Name	FN3424-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3424-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 50

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6896601 T-C Hetero INTERGENIC
SBS Chr1 9152642 C-T Hetero INTERGENIC
SBS Chr1 14796162 G-A Hetero INTERGENIC
SBS Chr1 17492662 A-C Hetero INTERGENIC
SBS Chr1 22133910 C-A Homo INTERGENIC
SBS Chr1 27265185 G-A Hetero INTERGENIC
SBS Chr1 31108785 C-G Hetero UTR_5_PRIME
SBS Chr1 33573853 A-G Hetero UTR_3_PRIME
SBS Chr1 43212041 C-A Hetero INTERGENIC
SBS Chr2 17789015 T-C Homo INTERGENIC
SBS Chr2 17855973 G-A Homo INTERGENIC
SBS Chr2 17855974 G-A Homo INTERGENIC
SBS Chr3 10289166 G-T Homo INTERGENIC
SBS Chr3 20703948 G-T Hetero INTERGENIC
SBS Chr3 33790358 A-G Hetero INTERGENIC
SBS Chr4 7916344 G-A Hetero INTERGENIC
SBS Chr4 7933859 A-C Hetero INTERGENIC
SBS Chr4 12898814 C-T Hetero INTERGENIC
SBS Chr4 24909161 A-G Homo INTERGENIC
SBS Chr4 25886949 C-T Homo INTERGENIC
SBS Chr4 33783005 T-A Hetero INTERGENIC
SBS Chr5 5830427 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake05g062100
SBS Chr5 7146890 C-A Hetero INTERGENIC
SBS Chr5 13582022 G-T Hetero UTR_3_PRIME
SBS Chr5 19692491 A-G Homo INTERGENIC
SBS Chr5 27492201 T-C Homo INTERGENIC
SBS Chr6 4183680 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake06g058000
SBS Chr6 22319663 A-G Homo INTERGENIC
SBS Chr7 2276097 C-T Hetero INTERGENIC
SBS Chr7 16873246 G-C Hetero INTERGENIC
SBS Chr7 19988893 C-G Hetero INTERGENIC
SBS Chr8 1509348 T-A Hetero INTERGENIC
SBS Chr8 2814943 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake08g031200
SBS Chr8 18190665 A-G Hetero INTERGENIC
SBS Chr9 11194022 A-G Homo INTERGENIC
SBS Chr9 15161892 A-G Hetero INTERGENIC
SBS Chr10 696579 T-G Homo NON_SYNONYMOUS_CODING OsKitaake10g004800
SBS Chr10 696580 C-T Homo SYNONYMOUS_CODING
SBS Chr10 8638342 T-C Homo INTERGENIC
SBS Chr10 15457882 G-A Homo INTERGENIC
SBS Chr11 21815915 T-C Hetero INTERGENIC
SBS Chr11 22526959 C-T Hetero INTERGENIC
SBS Chr11 23320079 G-A Homo INTERGENIC
SBS Chr12 6088312 G-A Hetero INTERGENIC
SBS Chr12 6088318 G-T Hetero INTERGENIC
SBS Chr12 7917811 C-A Hetero INTERGENIC
SBS Chr12 10345863 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake12g097000
SBS Chr12 10345864 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake12g097000
SBS Chr12 13727717 G-A Hetero INTERGENIC
SBS Chr12 21128795 C-A Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 6978441 6978447 6
Deletion Chr6 8143768 8143773 5 OsKitaake06g102900
Deletion Chr2 9553988 9553990 2
Deletion Chr10 10161162 10161163 1
Deletion Chr7 10923001 10959000 35999 OsKitaake07g103900
Deletion Chr10 11366001 11395000 28999 OsKitaake10g067270
Deletion Chr11 17591149 17591151 2
Deletion Chr7 18398048 18398050 2
Deletion Chr5 19974509 19974511 2
Deletion Chr6 23495001 23503000 7999 2
Deletion Chr8 26622501 26622502 1
Deletion Chr6 30969114 30969115 1
Deletion Chr1 30993001 31107000 113999 16
Deletion Chr3 34553985 34553989 4
Deletion Chr3 34929304 34929305 1
Deletion Chr4 36064376 36064397 21

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 24345762 24345765 2
Insertion Chr6 22319194 22319196 1
Insertion Chr8 29145562 29145565 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 18451463 18892559 OsKitaake06g169000
Inversion Chr6 18451472 18892561 OsKitaake06g169000
Inversion Chr1 30997074 31157361 2
Inversion Chr1 31109207 31157371 OsKitaake01g311100

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 9546662 Chr1 31109203 OsKitaake07g096800
Translocation Chr7 10913844 Chr1 31107154 2
Translocation Chr7 22603201 Chr4 31999264
Translocation Chr7 22604448 Chr4 31999278
Translocation Chr4 33776850 Chr3 5741136 OsKitaake04g280700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6896601	T-C	Hetero	INTERGENIC
SBS	Chr1	9152642	C-T	Hetero	INTERGENIC
SBS	Chr1	14796162	G-A	Hetero	INTERGENIC
SBS	Chr1	17492662	A-C	Hetero	INTERGENIC
SBS	Chr1	22133910	C-A	Homo	INTERGENIC
SBS	Chr1	27265185	G-A	Hetero	INTERGENIC
SBS	Chr1	31108785	C-G	Hetero	UTR_5_PRIME
SBS	Chr1	33573853	A-G	Hetero	UTR_3_PRIME
SBS	Chr1	43212041	C-A	Hetero	INTERGENIC
SBS	Chr2	17789015	T-C	Homo	INTERGENIC
SBS	Chr2	17855973	G-A	Homo	INTERGENIC
SBS	Chr2	17855974	G-A	Homo	INTERGENIC
SBS	Chr3	10289166	G-T	Homo	INTERGENIC
SBS	Chr3	20703948	G-T	Hetero	INTERGENIC
SBS	Chr3	33790358	A-G	Hetero	INTERGENIC
SBS	Chr4	7916344	G-A	Hetero	INTERGENIC
SBS	Chr4	7933859	A-C	Hetero	INTERGENIC
SBS	Chr4	12898814	C-T	Hetero	INTERGENIC
SBS	Chr4	24909161	A-G	Homo	INTERGENIC
SBS	Chr4	25886949	C-T	Homo	INTERGENIC
SBS	Chr4	33783005	T-A	Hetero	INTERGENIC
SBS	Chr5	5830427	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g062100
SBS	Chr5	7146890	C-A	Hetero	INTERGENIC
SBS	Chr5	13582022	G-T	Hetero	UTR_3_PRIME
SBS	Chr5	19692491	A-G	Homo	INTERGENIC
SBS	Chr5	27492201	T-C	Homo	INTERGENIC
SBS	Chr6	4183680	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g058000
SBS	Chr6	22319663	A-G	Homo	INTERGENIC
SBS	Chr7	2276097	C-T	Hetero	INTERGENIC
SBS	Chr7	16873246	G-C	Hetero	INTERGENIC
SBS	Chr7	19988893	C-G	Hetero	INTERGENIC
SBS	Chr8	1509348	T-A	Hetero	INTERGENIC
SBS	Chr8	2814943	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g031200
SBS	Chr8	18190665	A-G	Hetero	INTERGENIC
SBS	Chr9	11194022	A-G	Homo	INTERGENIC
SBS	Chr9	15161892	A-G	Hetero	INTERGENIC
SBS	Chr10	696579	T-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g004800
SBS	Chr10	696580	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr10	8638342	T-C	Homo	INTERGENIC
SBS	Chr10	15457882	G-A	Homo	INTERGENIC
SBS	Chr11	21815915	T-C	Hetero	INTERGENIC
SBS	Chr11	22526959	C-T	Hetero	INTERGENIC
SBS	Chr11	23320079	G-A	Homo	INTERGENIC
SBS	Chr12	6088312	G-A	Hetero	INTERGENIC
SBS	Chr12	6088318	G-T	Hetero	INTERGENIC
SBS	Chr12	7917811	C-A	Hetero	INTERGENIC
SBS	Chr12	10345863	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g097000
SBS	Chr12	10345864	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g097000
SBS	Chr12	13727717	G-A	Hetero	INTERGENIC
SBS	Chr12	21128795	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	6978441	6978447	6
Deletion	Chr6	8143768	8143773	5	OsKitaake06g102900
Deletion	Chr2	9553988	9553990	2
Deletion	Chr10	10161162	10161163	1
Deletion	Chr7	10923001	10959000	35999	OsKitaake07g103900
Deletion	Chr10	11366001	11395000	28999	OsKitaake10g067270
Deletion	Chr11	17591149	17591151	2
Deletion	Chr7	18398048	18398050	2
Deletion	Chr5	19974509	19974511	2
Deletion	Chr6	23495001	23503000	7999	2
Deletion	Chr8	26622501	26622502	1
Deletion	Chr6	30969114	30969115	1
Deletion	Chr1	30993001	31107000	113999	16
Deletion	Chr3	34553985	34553989	4
Deletion	Chr3	34929304	34929305	1
Deletion	Chr4	36064376	36064397	21

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	18451463	18892559	OsKitaake06g169000
Inversion	Chr6	18451472	18892561	OsKitaake06g169000
Inversion	Chr1	30997074	31157361	2
Inversion	Chr1	31109207	31157371	OsKitaake01g311100

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes