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Mutant Information

Mutant Name	FN3425-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3425-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3379042 T-C Hetero INTERGENIC
SBS Chr1 5438851 C-T Hetero INTERGENIC
SBS Chr1 12943977 C-T Hetero INTERGENIC
SBS Chr1 25389607 C-T Homo INTERGENIC
SBS Chr1 28439260 C-T Homo INTERGENIC
SBS Chr2 174754 G-A Homo UTR_3_PRIME
SBS Chr2 5398972 A-T Hetero INTERGENIC
SBS Chr2 27339578 C-T Hetero INTERGENIC
SBS Chr2 33325651 T-C Hetero INTRON
SBS Chr3 1636325 G-T Hetero INTERGENIC
SBS Chr3 2030557 A-T Hetero INTERGENIC
SBS Chr4 7088033 G-T Hetero INTERGENIC
SBS Chr4 10395636 C-T Hetero INTRON
SBS Chr4 28995148 C-T Homo INTERGENIC
SBS Chr5 20544689 G-A Hetero INTERGENIC
SBS Chr6 16540804 C-T Homo INTERGENIC
SBS Chr6 16540805 C-T Homo INTERGENIC
SBS Chr6 16644087 T-C Hetero INTERGENIC
SBS Chr6 20014786 T-C Hetero INTERGENIC
SBS Chr6 27663863 C-T Homo INTERGENIC
SBS Chr8 4872190 G-A Homo INTERGENIC
SBS Chr8 14074808 A-T Homo INTERGENIC
SBS Chr8 15259655 G-A Homo INTERGENIC
SBS Chr9 2559828 G-A Hetero INTERGENIC
SBS Chr10 18618756 G-A Hetero INTERGENIC
SBS Chr11 10624416 G-A Hetero INTERGENIC
SBS Chr11 13438704 T-G Hetero INTERGENIC
SBS Chr12 9711782 T-A Hetero INTRON
SBS Chr12 22781642 A-T Hetero INTERGENIC
SBS Chr12 23979814 G-T Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 557297 557299 2
Deletion Chr12 1470911 1470920 9
Deletion Chr10 2385483 2385497 14
Deletion Chr9 2576003 2576006 3
Deletion Chr5 6000971 6000973 2
Deletion Chr2 6714785 6714792 7
Deletion Chr8 17753215 17753216 1
Deletion Chr6 19340001 19400000 59999 3
Deletion Chr4 20651275 20651285 10
Deletion Chr1 20805847 20805859 12
Deletion Chr11 24537186 24537187 1
Deletion Chr11 26588948 26588957 9
Deletion Chr1 31571957 31571992 35

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 12633210 12633212 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 557353 957949
Inversion Chr7 557363 957973
Inversion Chr6 19337205 20272435
Inversion Chr6 19404818 20272438

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3379042	T-C	Hetero	INTERGENIC
SBS	Chr1	5438851	C-T	Hetero	INTERGENIC
SBS	Chr1	12943977	C-T	Hetero	INTERGENIC
SBS	Chr1	25389607	C-T	Homo	INTERGENIC
SBS	Chr1	28439260	C-T	Homo	INTERGENIC
SBS	Chr2	174754	G-A	Homo	UTR_3_PRIME
SBS	Chr2	5398972	A-T	Hetero	INTERGENIC
SBS	Chr2	27339578	C-T	Hetero	INTERGENIC
SBS	Chr2	33325651	T-C	Hetero	INTRON
SBS	Chr3	1636325	G-T	Hetero	INTERGENIC
SBS	Chr3	2030557	A-T	Hetero	INTERGENIC
SBS	Chr4	7088033	G-T	Hetero	INTERGENIC
SBS	Chr4	10395636	C-T	Hetero	INTRON
SBS	Chr4	28995148	C-T	Homo	INTERGENIC
SBS	Chr5	20544689	G-A	Hetero	INTERGENIC
SBS	Chr6	16540804	C-T	Homo	INTERGENIC
SBS	Chr6	16540805	C-T	Homo	INTERGENIC
SBS	Chr6	16644087	T-C	Hetero	INTERGENIC
SBS	Chr6	20014786	T-C	Hetero	INTERGENIC
SBS	Chr6	27663863	C-T	Homo	INTERGENIC
SBS	Chr8	4872190	G-A	Homo	INTERGENIC
SBS	Chr8	14074808	A-T	Homo	INTERGENIC
SBS	Chr8	15259655	G-A	Homo	INTERGENIC
SBS	Chr9	2559828	G-A	Hetero	INTERGENIC
SBS	Chr10	18618756	G-A	Hetero	INTERGENIC
SBS	Chr11	10624416	G-A	Hetero	INTERGENIC
SBS	Chr11	13438704	T-G	Hetero	INTERGENIC
SBS	Chr12	9711782	T-A	Hetero	INTRON
SBS	Chr12	22781642	A-T	Hetero	INTERGENIC
SBS	Chr12	23979814	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	557297	557299	2
Deletion	Chr12	1470911	1470920	9
Deletion	Chr10	2385483	2385497	14
Deletion	Chr9	2576003	2576006	3
Deletion	Chr5	6000971	6000973	2
Deletion	Chr2	6714785	6714792	7
Deletion	Chr8	17753215	17753216	1
Deletion	Chr6	19340001	19400000	59999	3
Deletion	Chr4	20651275	20651285	10
Deletion	Chr1	20805847	20805859	12
Deletion	Chr11	24537186	24537187	1
Deletion	Chr11	26588948	26588957	9
Deletion	Chr1	31571957	31571992	35

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	557353	957949
Inversion	Chr7	557363	957973
Inversion	Chr6	19337205	20272435
Inversion	Chr6	19404818	20272438

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes