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Mutant Information

Mutant Name	FN3426-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3426-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 50

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2812966 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g035500
SBS Chr1 11950221 G-C Hetero INTERGENIC
SBS Chr1 13146635 A-G Hetero INTERGENIC
SBS Chr1 13958128 A-G Hetero INTERGENIC
SBS Chr1 17007165 A-G Hetero INTERGENIC
SBS Chr1 17109833 G-A Hetero INTERGENIC
SBS Chr1 29554166 C-T Hetero UTR_3_PRIME
SBS Chr2 15788018 G-A Homo INTERGENIC
SBS Chr2 23661086 C-T Hetero INTERGENIC
SBS Chr2 28672170 G-A Hetero INTERGENIC
SBS Chr2 32459999 G-A Hetero INTERGENIC
SBS Chr3 8038765 C-G Hetero INTERGENIC
SBS Chr3 31290889 A-G Homo INTERGENIC
SBS Chr3 32545234 G-C Hetero INTERGENIC
SBS Chr4 6855170 T-C Homo INTERGENIC
SBS Chr4 13827777 G-A Homo INTRON
SBS Chr4 15703186 T-A Homo INTERGENIC
SBS Chr4 24592708 G-A Homo INTERGENIC
SBS Chr5 5456487 C-A Hetero INTERGENIC
SBS Chr5 13482337 G-A Hetero INTERGENIC
SBS Chr5 13910323 C-T Homo INTERGENIC
SBS Chr6 7142047 C-T Hetero SYNONYMOUS_CODING
SBS Chr6 12263851 C-A Hetero INTERGENIC
SBS Chr6 13449302 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake06g141700
SBS Chr6 15247209 T-A Hetero INTERGENIC
SBS Chr6 15467719 G-A Hetero INTERGENIC
SBS Chr6 26595010 C-T Hetero INTRON
SBS Chr7 5110931 G-A Hetero INTERGENIC
SBS Chr7 5846446 C-G Hetero INTERGENIC
SBS Chr7 9925501 C-T Hetero INTERGENIC
SBS Chr7 23937325 T-A Hetero INTERGENIC
SBS Chr8 1154438 G-A Hetero INTERGENIC
SBS Chr8 7392145 C-T Hetero INTERGENIC
SBS Chr8 9793537 G-A Homo INTERGENIC
SBS Chr8 11303626 G-A Homo INTERGENIC
SBS Chr8 17655736 G-A Homo INTERGENIC
SBS Chr8 18212230 G-A Homo INTERGENIC
SBS Chr8 21745584 C-T Hetero INTERGENIC
SBS Chr8 22324915 G-A Hetero SYNONYMOUS_CODING
SBS Chr8 26322142 A-G Homo INTERGENIC
SBS Chr8 27370446 T-A Hetero INTERGENIC
SBS Chr9 15267394 C-T Hetero INTRON
SBS Chr10 8033772 T-A Hetero INTERGENIC
SBS Chr11 19950953 C-T Homo INTERGENIC
SBS Chr11 20144037 G-C Hetero INTERGENIC
SBS Chr11 26964815 A-T Hetero INTERGENIC
SBS Chr12 3069158 T-G Homo INTERGENIC
SBS Chr12 3313549 A-C Homo INTRON
SBS Chr12 12592674 C-T Homo INTERGENIC
SBS Chr12 14358556 C-T Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 1312724 1312727 3
Deletion Chr12 4823688 4823689 1
Deletion Chr12 6055640 6055646 6
Deletion Chr6 6958099 6958106 7
Deletion Chr5 11092525 11092528 3 OsKitaake05g094500
Deletion Chr5 11143540 11143549 9
Deletion Chr12 16145667 16145671 4
Deletion Chr5 17262745 17262753 8
Deletion Chr11 19415028 19415029 1
Deletion Chr6 23193001 23206000 12999 OsKitaake06g204300
Deletion Chr7 28117330 28117334 4
Deletion Chr1 30042688 30042696 8
Deletion Chr2 36057685 36057694 9

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 9765307 9765311 3
Insertion Chr1 38734287 38734292 4
Insertion Chr2 34581277 34581280 2
Insertion Chr7 12048823 12048827 3
Insertion Chr3 20044043 20044045 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 7086985 7917295 OsKitaake04g041200
Inversion Chr4 7086990 7917295 OsKitaake04g041200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2812966	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g035500
SBS	Chr1	11950221	G-C	Hetero	INTERGENIC
SBS	Chr1	13146635	A-G	Hetero	INTERGENIC
SBS	Chr1	13958128	A-G	Hetero	INTERGENIC
SBS	Chr1	17007165	A-G	Hetero	INTERGENIC
SBS	Chr1	17109833	G-A	Hetero	INTERGENIC
SBS	Chr1	29554166	C-T	Hetero	UTR_3_PRIME
SBS	Chr2	15788018	G-A	Homo	INTERGENIC
SBS	Chr2	23661086	C-T	Hetero	INTERGENIC
SBS	Chr2	28672170	G-A	Hetero	INTERGENIC
SBS	Chr2	32459999	G-A	Hetero	INTERGENIC
SBS	Chr3	8038765	C-G	Hetero	INTERGENIC
SBS	Chr3	31290889	A-G	Homo	INTERGENIC
SBS	Chr3	32545234	G-C	Hetero	INTERGENIC
SBS	Chr4	6855170	T-C	Homo	INTERGENIC
SBS	Chr4	13827777	G-A	Homo	INTRON
SBS	Chr4	15703186	T-A	Homo	INTERGENIC
SBS	Chr4	24592708	G-A	Homo	INTERGENIC
SBS	Chr5	5456487	C-A	Hetero	INTERGENIC
SBS	Chr5	13482337	G-A	Hetero	INTERGENIC
SBS	Chr5	13910323	C-T	Homo	INTERGENIC
SBS	Chr6	7142047	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr6	12263851	C-A	Hetero	INTERGENIC
SBS	Chr6	13449302	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g141700
SBS	Chr6	15247209	T-A	Hetero	INTERGENIC
SBS	Chr6	15467719	G-A	Hetero	INTERGENIC
SBS	Chr6	26595010	C-T	Hetero	INTRON
SBS	Chr7	5110931	G-A	Hetero	INTERGENIC
SBS	Chr7	5846446	C-G	Hetero	INTERGENIC
SBS	Chr7	9925501	C-T	Hetero	INTERGENIC
SBS	Chr7	23937325	T-A	Hetero	INTERGENIC
SBS	Chr8	1154438	G-A	Hetero	INTERGENIC
SBS	Chr8	7392145	C-T	Hetero	INTERGENIC
SBS	Chr8	9793537	G-A	Homo	INTERGENIC
SBS	Chr8	11303626	G-A	Homo	INTERGENIC
SBS	Chr8	17655736	G-A	Homo	INTERGENIC
SBS	Chr8	18212230	G-A	Homo	INTERGENIC
SBS	Chr8	21745584	C-T	Hetero	INTERGENIC
SBS	Chr8	22324915	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr8	26322142	A-G	Homo	INTERGENIC
SBS	Chr8	27370446	T-A	Hetero	INTERGENIC
SBS	Chr9	15267394	C-T	Hetero	INTRON
SBS	Chr10	8033772	T-A	Hetero	INTERGENIC
SBS	Chr11	19950953	C-T	Homo	INTERGENIC
SBS	Chr11	20144037	G-C	Hetero	INTERGENIC
SBS	Chr11	26964815	A-T	Hetero	INTERGENIC
SBS	Chr12	3069158	T-G	Homo	INTERGENIC
SBS	Chr12	3313549	A-C	Homo	INTRON
SBS	Chr12	12592674	C-T	Homo	INTERGENIC
SBS	Chr12	14358556	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	1312724	1312727	3
Deletion	Chr12	4823688	4823689	1
Deletion	Chr12	6055640	6055646	6
Deletion	Chr6	6958099	6958106	7
Deletion	Chr5	11092525	11092528	3	OsKitaake05g094500
Deletion	Chr5	11143540	11143549	9
Deletion	Chr12	16145667	16145671	4
Deletion	Chr5	17262745	17262753	8
Deletion	Chr11	19415028	19415029	1
Deletion	Chr6	23193001	23206000	12999	OsKitaake06g204300
Deletion	Chr7	28117330	28117334	4
Deletion	Chr1	30042688	30042696	8
Deletion	Chr2	36057685	36057694	9

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	7086985	7917295	OsKitaake04g041200
Inversion	Chr4	7086990	7917295	OsKitaake04g041200

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes