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| Mutant Information |
|---|
| Mutant Name | FN3427-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3427-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 30
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 14242511 | A-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 20512869 | C-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 36504106 | T-C | Homo | INTERGENIC | |
| SBS | Chr2 | 176811 | T-G | Homo | UTR_3_PRIME | |
| SBS | Chr2 | 7603857 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 22670024 | G-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake02g220100 |
| SBS | Chr2 | 23818116 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 14018749 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 1514056 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 11148202 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 11151900 | G-A | Hetero | INTRON | |
| SBS | Chr5 | 19398606 | C-A | Hetero | UTR_3_PRIME | |
| SBS | Chr5 | 19398608 | T-A | Hetero | UTR_3_PRIME | |
| SBS | Chr5 | 22451318 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 7408476 | C-T | Hetero | UTR_5_PRIME | |
| SBS | Chr7 | 1045435 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 26709024 | T-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 26791686 | T-A | Homo | INTERGENIC | |
| SBS | Chr8 | 7261493 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 8623390 | T-A | Hetero | INTRON | |
| SBS | Chr8 | 15163231 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 20199664 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 2354595 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake09g012300 |
| SBS | Chr9 | 5607886 | A-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 10609593 | C-G | Homo | INTRON | |
| SBS | Chr10 | 1922862 | G-A | Homo | INTERGENIC | |
| SBS | Chr10 | 9094200 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 12384839 | C-T | Homo | INTRON | |
| SBS | Chr11 | 20482602 | T-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 22128197 | C-T | Hetero | INTERGENIC |
Deletions: 9
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 1536426 | 1536427 | 1 | |
| Deletion | Chr4 | 4126001 | 4541000 | 414999 | 16 |
| Deletion | Chr12 | 18385972 | 18385978 | 6 | |
| Deletion | Chr2 | 20240146 | 20240156 | 10 | |
| Deletion | Chr9 | 22639228 | 22639232 | 4 | |
| Deletion | Chr1 | 25889769 | 25889779 | 10 | OsKitaake01g251700 |
| Deletion | Chr1 | 27152343 | 27152344 | 1 | |
| Deletion | Chr8 | 28202694 | 28202696 | 2 | OsKitaake08g237500 |
| Deletion | Chr3 | 34127384 | 34127385 | 1 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 8610634 | 8610637 | 2 | |
| Insertion | Chr1 | 36686955 | 36686958 | 2 | |
| Insertion | Chr6 | 30054479 | 30054481 | 1 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr4 | 9865653 | 10486761 | |
| Inversion | Chr4 | 10503632 | 10701849 | |
| Inversion | Chr4 | 26715671 | 26804882 | 2 |
| Inversion | Chr4 | 26715677 | 26804968 | 2 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 4532599 | Chr6 | 25692185 | |
| Translocation | Chr10 | 4532607 | Chr6 | 25692311 |