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Mutant Information

Mutant Name	FN3429-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3429-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13194392 G-T Homo INTERGENIC
SBS Chr1 31102972 G-C Hetero INTERGENIC
SBS Chr1 40220487 C-A Hetero INTERGENIC
SBS Chr1 42442810 C-T Hetero INTERGENIC
SBS Chr2 10770588 C-T Hetero INTERGENIC
SBS Chr2 28466795 C-T Hetero START_GAINED
SBS Chr3 945952 G-A Hetero INTERGENIC
SBS Chr3 3526733 G-T Hetero SPLICE_SITE_REGION
SBS Chr3 12111593 G-A Hetero INTERGENIC
SBS Chr3 19316698 C-T Hetero INTERGENIC
SBS Chr3 26279671 C-T Hetero INTERGENIC
SBS Chr3 30392260 T-A Hetero INTERGENIC
SBS Chr5 458606 C-T Hetero INTERGENIC
SBS Chr5 12752930 G-A Hetero INTERGENIC
SBS Chr5 27623656 G-A Hetero INTERGENIC
SBS Chr7 6753426 A-G Hetero INTERGENIC
SBS Chr7 21323427 C-T Hetero INTERGENIC
SBS Chr8 8569485 G-A Hetero INTERGENIC
SBS Chr8 9991835 G-T Hetero INTERGENIC
SBS Chr8 13142723 C-T Homo INTRON
SBS Chr8 15083121 G-A Hetero INTERGENIC
SBS Chr8 22100244 G-A Hetero INTRON
SBS Chr8 25751403 C-T Hetero INTERGENIC
SBS Chr9 10069873 C-T Homo INTERGENIC
SBS Chr9 11822144 G-A Homo INTRON
SBS Chr9 22211796 T-A Homo INTERGENIC
SBS Chr10 11831743 C-A Homo INTERGENIC
SBS Chr10 16821242 A-G Hetero INTERGENIC
SBS Chr10 17426275 C-A Homo INTERGENIC
SBS Chr11 11771408 C-T Hetero INTERGENIC
SBS Chr11 16998377 G-A Hetero INTERGENIC
SBS Chr12 4789714 G-A Hetero INTERGENIC
SBS Chr12 20476452 C-T Hetero INTERGENIC

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 452192 452194 2
Deletion Chr9 8197537 8197546 9
Deletion Chr3 10330492 10330494 2
Deletion Chr4 11425026 11425027 1
Deletion Chr5 11449323 11449329 6
Deletion Chr8 11609188 11609213 25
Deletion Chr11 12995001 13374000 378999 5
Deletion Chr11 13376001 13441000 64999 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 4471064 4471067 2
Insertion Chr8 21151664 21151669 4
Insertion Chr9 2126954 2126956 1

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 17422589 Chr8 15649622
Translocation Chr9 17424336 Chr8 15649622
Translocation Chr12 21149713 Chr3 36646345 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13194392	G-T	Homo	INTERGENIC
SBS	Chr1	31102972	G-C	Hetero	INTERGENIC
SBS	Chr1	40220487	C-A	Hetero	INTERGENIC
SBS	Chr1	42442810	C-T	Hetero	INTERGENIC
SBS	Chr2	10770588	C-T	Hetero	INTERGENIC
SBS	Chr2	28466795	C-T	Hetero	START_GAINED
SBS	Chr3	945952	G-A	Hetero	INTERGENIC
SBS	Chr3	3526733	G-T	Hetero	SPLICE_SITE_REGION
SBS	Chr3	12111593	G-A	Hetero	INTERGENIC
SBS	Chr3	19316698	C-T	Hetero	INTERGENIC
SBS	Chr3	26279671	C-T	Hetero	INTERGENIC
SBS	Chr3	30392260	T-A	Hetero	INTERGENIC
SBS	Chr5	458606	C-T	Hetero	INTERGENIC
SBS	Chr5	12752930	G-A	Hetero	INTERGENIC
SBS	Chr5	27623656	G-A	Hetero	INTERGENIC
SBS	Chr7	6753426	A-G	Hetero	INTERGENIC
SBS	Chr7	21323427	C-T	Hetero	INTERGENIC
SBS	Chr8	8569485	G-A	Hetero	INTERGENIC
SBS	Chr8	9991835	G-T	Hetero	INTERGENIC
SBS	Chr8	13142723	C-T	Homo	INTRON
SBS	Chr8	15083121	G-A	Hetero	INTERGENIC
SBS	Chr8	22100244	G-A	Hetero	INTRON
SBS	Chr8	25751403	C-T	Hetero	INTERGENIC
SBS	Chr9	10069873	C-T	Homo	INTERGENIC
SBS	Chr9	11822144	G-A	Homo	INTRON
SBS	Chr9	22211796	T-A	Homo	INTERGENIC
SBS	Chr10	11831743	C-A	Homo	INTERGENIC
SBS	Chr10	16821242	A-G	Hetero	INTERGENIC
SBS	Chr10	17426275	C-A	Homo	INTERGENIC
SBS	Chr11	11771408	C-T	Hetero	INTERGENIC
SBS	Chr11	16998377	G-A	Hetero	INTERGENIC
SBS	Chr12	4789714	G-A	Hetero	INTERGENIC
SBS	Chr12	20476452	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	452192	452194	2
Deletion	Chr9	8197537	8197546	9
Deletion	Chr3	10330492	10330494	2
Deletion	Chr4	11425026	11425027	1
Deletion	Chr5	11449323	11449329	6
Deletion	Chr8	11609188	11609213	25
Deletion	Chr11	12995001	13374000	378999	5
Deletion	Chr11	13376001	13441000	64999	2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	17422589	Chr8	15649622
Translocation	Chr9	17424336	Chr8	15649622
Translocation	Chr12	21149713	Chr3	36646345	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes