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Mutant Information

Mutant Name	FN3430-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3430-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8140761 T-A Hetero INTERGENIC
SBS Chr1 22754295 C-G Homo INTERGENIC
SBS Chr1 27964348 G-A Hetero UTR_3_PRIME
SBS Chr1 38702289 G-A Homo INTRON
SBS Chr2 7308064 T-G Homo INTERGENIC
SBS Chr2 20198863 A-C Hetero INTERGENIC
SBS Chr2 33046109 C-T Hetero INTERGENIC
SBS Chr3 5713999 A-T Hetero INTERGENIC
SBS Chr3 9313849 C-T Hetero INTERGENIC
SBS Chr3 11048773 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g151400
SBS Chr3 13096989 T-C Hetero INTERGENIC
SBS Chr3 20462284 G-T Hetero INTERGENIC
SBS Chr3 21749703 T-C Hetero INTERGENIC
SBS Chr3 24577554 G-A Hetero INTERGENIC
SBS Chr3 32528618 C-T Hetero INTERGENIC
SBS Chr4 1990214 G-T Homo INTERGENIC
SBS Chr5 12807928 T-G Hetero INTERGENIC
SBS Chr5 13156177 C-T Hetero INTERGENIC
SBS Chr5 13330997 G-A Hetero INTERGENIC
SBS Chr5 25238078 G-A Homo INTERGENIC
SBS Chr6 8124068 G-A Homo INTERGENIC
SBS Chr6 19597173 C-G Hetero INTERGENIC
SBS Chr7 7370190 A-T Homo INTERGENIC
SBS Chr7 20166628 C-T Hetero INTERGENIC
SBS Chr7 24410270 G-A Homo INTERGENIC
SBS Chr7 25506102 G-A Hetero INTERGENIC
SBS Chr8 4410461 G-C Homo INTERGENIC
SBS Chr8 11108107 G-A Homo INTERGENIC
SBS Chr8 14231669 T-G Homo INTERGENIC
SBS Chr8 18150689 T-A Homo INTERGENIC
SBS Chr8 18872113 A-G Homo INTRON
SBS Chr8 21378759 C-T Hetero INTERGENIC
SBS Chr9 11961177 G-T Hetero INTERGENIC
SBS Chr9 15879791 A-G Hetero UTR_3_PRIME
SBS Chr9 17994492 G-C Hetero SYNONYMOUS_CODING
SBS Chr10 8336838 C-T Hetero INTERGENIC
SBS Chr10 16977664 C-T Hetero INTERGENIC
SBS Chr10 20406680 C-T Hetero UTR_3_PRIME
SBS Chr11 7778783 A-G Hetero INTRON
SBS Chr11 13214620 A-C Homo INTERGENIC
SBS Chr11 16249739 G-C Hetero INTERGENIC
SBS Chr11 21256251 T-A Homo INTERGENIC
SBS Chr12 23328447 G-T Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 11189249 11189258 9
Deletion Chr2 11949014 11949023 9
Deletion Chr11 12753091 12753092 1
Deletion Chr7 13778641 13778642 1
Deletion Chr11 17614388 17614409 21
Deletion Chr7 20094875 20094876 1
Deletion Chr11 20377511 20377520 9
Deletion Chr12 20445001 20593000 147999 4
Deletion Chr12 20596001 20718000 121999 16
Deletion Chr5 22901434 22901442 8
Deletion Chr11 26148082 26148083 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 4706092 4706095 2
Insertion Chr7 28283842 28283847 4

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8140761	T-A	Hetero	INTERGENIC
SBS	Chr1	22754295	C-G	Homo	INTERGENIC
SBS	Chr1	27964348	G-A	Hetero	UTR_3_PRIME
SBS	Chr1	38702289	G-A	Homo	INTRON
SBS	Chr2	7308064	T-G	Homo	INTERGENIC
SBS	Chr2	20198863	A-C	Hetero	INTERGENIC
SBS	Chr2	33046109	C-T	Hetero	INTERGENIC
SBS	Chr3	5713999	A-T	Hetero	INTERGENIC
SBS	Chr3	9313849	C-T	Hetero	INTERGENIC
SBS	Chr3	11048773	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g151400
SBS	Chr3	13096989	T-C	Hetero	INTERGENIC
SBS	Chr3	20462284	G-T	Hetero	INTERGENIC
SBS	Chr3	21749703	T-C	Hetero	INTERGENIC
SBS	Chr3	24577554	G-A	Hetero	INTERGENIC
SBS	Chr3	32528618	C-T	Hetero	INTERGENIC
SBS	Chr4	1990214	G-T	Homo	INTERGENIC
SBS	Chr5	12807928	T-G	Hetero	INTERGENIC
SBS	Chr5	13156177	C-T	Hetero	INTERGENIC
SBS	Chr5	13330997	G-A	Hetero	INTERGENIC
SBS	Chr5	25238078	G-A	Homo	INTERGENIC
SBS	Chr6	8124068	G-A	Homo	INTERGENIC
SBS	Chr6	19597173	C-G	Hetero	INTERGENIC
SBS	Chr7	7370190	A-T	Homo	INTERGENIC
SBS	Chr7	20166628	C-T	Hetero	INTERGENIC
SBS	Chr7	24410270	G-A	Homo	INTERGENIC
SBS	Chr7	25506102	G-A	Hetero	INTERGENIC
SBS	Chr8	4410461	G-C	Homo	INTERGENIC
SBS	Chr8	11108107	G-A	Homo	INTERGENIC
SBS	Chr8	14231669	T-G	Homo	INTERGENIC
SBS	Chr8	18150689	T-A	Homo	INTERGENIC
SBS	Chr8	18872113	A-G	Homo	INTRON
SBS	Chr8	21378759	C-T	Hetero	INTERGENIC
SBS	Chr9	11961177	G-T	Hetero	INTERGENIC
SBS	Chr9	15879791	A-G	Hetero	UTR_3_PRIME
SBS	Chr9	17994492	G-C	Hetero	SYNONYMOUS_CODING
SBS	Chr10	8336838	C-T	Hetero	INTERGENIC
SBS	Chr10	16977664	C-T	Hetero	INTERGENIC
SBS	Chr10	20406680	C-T	Hetero	UTR_3_PRIME
SBS	Chr11	7778783	A-G	Hetero	INTRON
SBS	Chr11	13214620	A-C	Homo	INTERGENIC
SBS	Chr11	16249739	G-C	Hetero	INTERGENIC
SBS	Chr11	21256251	T-A	Homo	INTERGENIC
SBS	Chr12	23328447	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	11189249	11189258	9
Deletion	Chr2	11949014	11949023	9
Deletion	Chr11	12753091	12753092	1
Deletion	Chr7	13778641	13778642	1
Deletion	Chr11	17614388	17614409	21
Deletion	Chr7	20094875	20094876	1
Deletion	Chr11	20377511	20377520	9
Deletion	Chr12	20445001	20593000	147999	4
Deletion	Chr12	20596001	20718000	121999	16
Deletion	Chr5	22901434	22901442	8
Deletion	Chr11	26148082	26148083	1

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes