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Mutant Information

Mutant Name	FN3432-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3432-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 59

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10315916 A-T Homo INTRON
SBS Chr1 29181141 A-G Hetero INTRON
SBS Chr1 41074893 T-C Hetero INTERGENIC
SBS Chr1 41614499 G-T Hetero INTERGENIC
SBS Chr1 44109337 G-T Hetero INTERGENIC
SBS Chr2 4033708 T-A Homo INTERGENIC
SBS Chr2 5602465 G-T Homo INTRON
SBS Chr2 6287845 C-T Homo NON_SYNONYMOUS_CODING OsKitaake02g085000
SBS Chr2 17289163 A-T Homo INTERGENIC
SBS Chr3 1063894 T-C Hetero SYNONYMOUS_CODING
SBS Chr3 21334366 G-A Hetero INTERGENIC
SBS Chr3 29622158 G-T Hetero INTERGENIC
SBS Chr3 34153930 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake03g369200
SBS Chr4 357152 G-A Hetero INTERGENIC
SBS Chr4 1802304 G-A Hetero INTERGENIC
SBS Chr4 9454972 C-T Hetero INTERGENIC
SBS Chr4 11242610 G-T Hetero INTERGENIC
SBS Chr4 13812178 C-G Hetero INTRON
SBS Chr4 18656724 G-A Homo INTERGENIC
SBS Chr4 35202429 T-C Hetero INTERGENIC
SBS Chr4 36864926 C-G Homo NON_SYNONYMOUS_CODING OsKitaake04g322000
SBS Chr5 1011555 T-C Hetero INTERGENIC
SBS Chr5 7922408 C-A Homo INTERGENIC
SBS Chr5 7922409 C-T Homo INTERGENIC
SBS Chr5 10455648 C-T Homo INTERGENIC
SBS Chr5 19783822 T-A Hetero INTRON
SBS Chr5 20373856 G-A Hetero INTERGENIC
SBS Chr6 16713053 A-C Hetero INTERGENIC
SBS Chr6 20464087 G-A Hetero INTERGENIC
SBS Chr6 22551458 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g198000
SBS Chr6 30861832 C-A Hetero INTERGENIC
SBS Chr7 1499362 G-C Hetero INTERGENIC
SBS Chr7 4893658 A-T Homo INTRON
SBS Chr7 20407289 T-A Hetero INTERGENIC
SBS Chr8 3852162 C-G Hetero INTERGENIC
SBS Chr8 10955129 T-C Hetero INTERGENIC
SBS Chr8 15135803 C-T Hetero INTERGENIC
SBS Chr8 17619206 C-T Hetero INTERGENIC
SBS Chr8 17745594 G-A Hetero INTERGENIC
SBS Chr8 18768695 G-A Hetero INTERGENIC
SBS Chr8 23663422 G-A Homo INTERGENIC
SBS Chr9 5706249 G-A Hetero SYNONYMOUS_CODING
SBS Chr9 9668480 T-C Hetero INTERGENIC
SBS Chr9 14555670 G-A Hetero INTERGENIC
SBS Chr10 9935436 C-G Hetero INTERGENIC
SBS Chr10 14108152 G-A Hetero INTERGENIC
SBS Chr10 15182426 G-T Hetero INTRON
SBS Chr10 17000051 C-A Hetero INTRON
SBS Chr11 7295800 G-A Homo INTERGENIC
SBS Chr11 11550976 C-G Hetero INTERGENIC
SBS Chr11 11572251 C-G Hetero INTRON
SBS Chr11 16156286 T-A Hetero INTERGENIC
SBS Chr11 21733982 C-T Hetero INTERGENIC
SBS Chr11 23753892 T-A Hetero UTR_3_PRIME
SBS Chr12 755012 C-T Hetero SYNONYMOUS_CODING
SBS Chr12 755013 C-T Hetero SYNONYMOUS_CODING
SBS Chr12 2973102 T-G Hetero INTERGENIC
SBS Chr12 12275132 G-A Hetero INTERGENIC
SBS Chr12 16701811 C-T Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 66410 66414 4
Deletion Chr3 624737 624739 2
Deletion Chr8 627005 627014 9
Deletion Chr6 2335529 2335530 1
Deletion Chr11 4359109 4359110 1
Deletion Chr12 5886955 5886962 7
Deletion Chr3 9279742 9279748 6
Deletion Chr4 11494327 11494331 4
Deletion Chr3 17650844 17650845 1
Deletion Chr8 19970095 19970110 15
Deletion Chr11 21054925 21054926 1
Deletion Chr8 25697810 25697814 4
Deletion Chr8 26554481 26554484 3
Deletion Chr4 27140666 27140667 1 OsKitaake04g197400
Deletion Chr11 29486840 29486841 1 OsKitaake11g242600
Deletion Chr4 33555019 33555027 8

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr11 26812709 26812711 1

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 22162845 22308838
Inversion Chr8 24212459 25139037 OsKitaake08g187300
Inversion Chr8 25139040 25141765

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 15476942 Chr3 22308832 OsKitaake09g108800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10315916	A-T	Homo	INTRON
SBS	Chr1	29181141	A-G	Hetero	INTRON
SBS	Chr1	41074893	T-C	Hetero	INTERGENIC
SBS	Chr1	41614499	G-T	Hetero	INTERGENIC
SBS	Chr1	44109337	G-T	Hetero	INTERGENIC
SBS	Chr2	4033708	T-A	Homo	INTERGENIC
SBS	Chr2	5602465	G-T	Homo	INTRON
SBS	Chr2	6287845	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g085000
SBS	Chr2	17289163	A-T	Homo	INTERGENIC
SBS	Chr3	1063894	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr3	21334366	G-A	Hetero	INTERGENIC
SBS	Chr3	29622158	G-T	Hetero	INTERGENIC
SBS	Chr3	34153930	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g369200
SBS	Chr4	357152	G-A	Hetero	INTERGENIC
SBS	Chr4	1802304	G-A	Hetero	INTERGENIC
SBS	Chr4	9454972	C-T	Hetero	INTERGENIC
SBS	Chr4	11242610	G-T	Hetero	INTERGENIC
SBS	Chr4	13812178	C-G	Hetero	INTRON
SBS	Chr4	18656724	G-A	Homo	INTERGENIC
SBS	Chr4	35202429	T-C	Hetero	INTERGENIC
SBS	Chr4	36864926	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g322000
SBS	Chr5	1011555	T-C	Hetero	INTERGENIC
SBS	Chr5	7922408	C-A	Homo	INTERGENIC
SBS	Chr5	7922409	C-T	Homo	INTERGENIC
SBS	Chr5	10455648	C-T	Homo	INTERGENIC
SBS	Chr5	19783822	T-A	Hetero	INTRON
SBS	Chr5	20373856	G-A	Hetero	INTERGENIC
SBS	Chr6	16713053	A-C	Hetero	INTERGENIC
SBS	Chr6	20464087	G-A	Hetero	INTERGENIC
SBS	Chr6	22551458	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g198000
SBS	Chr6	30861832	C-A	Hetero	INTERGENIC
SBS	Chr7	1499362	G-C	Hetero	INTERGENIC
SBS	Chr7	4893658	A-T	Homo	INTRON
SBS	Chr7	20407289	T-A	Hetero	INTERGENIC
SBS	Chr8	3852162	C-G	Hetero	INTERGENIC
SBS	Chr8	10955129	T-C	Hetero	INTERGENIC
SBS	Chr8	15135803	C-T	Hetero	INTERGENIC
SBS	Chr8	17619206	C-T	Hetero	INTERGENIC
SBS	Chr8	17745594	G-A	Hetero	INTERGENIC
SBS	Chr8	18768695	G-A	Hetero	INTERGENIC
SBS	Chr8	23663422	G-A	Homo	INTERGENIC
SBS	Chr9	5706249	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr9	9668480	T-C	Hetero	INTERGENIC
SBS	Chr9	14555670	G-A	Hetero	INTERGENIC
SBS	Chr10	9935436	C-G	Hetero	INTERGENIC
SBS	Chr10	14108152	G-A	Hetero	INTERGENIC
SBS	Chr10	15182426	G-T	Hetero	INTRON
SBS	Chr10	17000051	C-A	Hetero	INTRON
SBS	Chr11	7295800	G-A	Homo	INTERGENIC
SBS	Chr11	11550976	C-G	Hetero	INTERGENIC
SBS	Chr11	11572251	C-G	Hetero	INTRON
SBS	Chr11	16156286	T-A	Hetero	INTERGENIC
SBS	Chr11	21733982	C-T	Hetero	INTERGENIC
SBS	Chr11	23753892	T-A	Hetero	UTR_3_PRIME
SBS	Chr12	755012	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr12	755013	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr12	2973102	T-G	Hetero	INTERGENIC
SBS	Chr12	12275132	G-A	Hetero	INTERGENIC
SBS	Chr12	16701811	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	66410	66414	4
Deletion	Chr3	624737	624739	2
Deletion	Chr8	627005	627014	9
Deletion	Chr6	2335529	2335530	1
Deletion	Chr11	4359109	4359110	1
Deletion	Chr12	5886955	5886962	7
Deletion	Chr3	9279742	9279748	6
Deletion	Chr4	11494327	11494331	4
Deletion	Chr3	17650844	17650845	1
Deletion	Chr8	19970095	19970110	15
Deletion	Chr11	21054925	21054926	1
Deletion	Chr8	25697810	25697814	4
Deletion	Chr8	26554481	26554484	3
Deletion	Chr4	27140666	27140667	1	OsKitaake04g197400
Deletion	Chr11	29486840	29486841	1	OsKitaake11g242600
Deletion	Chr4	33555019	33555027	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	22162845	22308838
Inversion	Chr8	24212459	25139037	OsKitaake08g187300
Inversion	Chr8	25139040	25141765

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes