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Mutant Information

Mutant Name	FN3433-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3433-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 25

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 23143644 T-A Hetero INTERGENIC
SBS Chr1 41452302 C-T Hetero SYNONYMOUS_CODING
SBS Chr1 42757522 G-A Hetero INTERGENIC
SBS Chr2 26973941 A-G Hetero INTERGENIC
SBS Chr2 32950969 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g338700
SBS Chr2 35967490 G-A Homo INTERGENIC
SBS Chr3 10056944 T-G Hetero INTERGENIC
SBS Chr3 26658835 G-A Homo INTERGENIC
SBS Chr4 24942079 A-G Homo INTERGENIC
SBS Chr4 25016880 A-T Homo INTERGENIC
SBS Chr5 2979283 C-T Hetero SYNONYMOUS_CODING
SBS Chr5 11047849 A-C Homo INTERGENIC
SBS Chr6 8991876 C-G Hetero INTERGENIC
SBS Chr6 10131839 T-A Homo INTRON
SBS Chr6 28793924 C-T Homo INTERGENIC
SBS Chr7 7756952 C-T Hetero INTERGENIC
SBS Chr8 24551704 T-C Hetero INTERGENIC
SBS Chr8 25108300 T-A Hetero INTERGENIC
SBS Chr8 26487732 C-G Hetero UTR_5_PRIME
SBS Chr9 14768406 C-A Hetero INTERGENIC
SBS Chr10 4301011 C-T Hetero INTERGENIC
SBS Chr10 6961905 G-A Hetero INTRON
SBS Chr10 17106000 T-C Homo INTRON
SBS Chr12 15238112 T-C Hetero INTERGENIC
SBS Chr12 15264163 A-T Hetero INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 20692 21044 352
Deletion Chr4 6378295 6378296 1
Deletion Chr10 20139032 20139042 10
Deletion Chr7 26342680 26342681 1
Deletion Chr4 29408681 29408689 8
Deletion Chr1 31515147 31515164 17
Deletion Chr4 31540743 31540760 17
Deletion Chr1 36105625 36105634 9
Deletion Chr1 36333503 36333505 2

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr11 20607688 20607692 3
Insertion Chr7 7919308 7919311 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 7835545 8161258
Inversion Chr5 7835559 8161291
Inversion Chr4 24164933 24602038 OsKitaake04g155100
Inversion Chr4 24164947 24602047 OsKitaake04g155100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	23143644	T-A	Hetero	INTERGENIC
SBS	Chr1	41452302	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr1	42757522	G-A	Hetero	INTERGENIC
SBS	Chr2	26973941	A-G	Hetero	INTERGENIC
SBS	Chr2	32950969	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g338700
SBS	Chr2	35967490	G-A	Homo	INTERGENIC
SBS	Chr3	10056944	T-G	Hetero	INTERGENIC
SBS	Chr3	26658835	G-A	Homo	INTERGENIC
SBS	Chr4	24942079	A-G	Homo	INTERGENIC
SBS	Chr4	25016880	A-T	Homo	INTERGENIC
SBS	Chr5	2979283	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr5	11047849	A-C	Homo	INTERGENIC
SBS	Chr6	8991876	C-G	Hetero	INTERGENIC
SBS	Chr6	10131839	T-A	Homo	INTRON
SBS	Chr6	28793924	C-T	Homo	INTERGENIC
SBS	Chr7	7756952	C-T	Hetero	INTERGENIC
SBS	Chr8	24551704	T-C	Hetero	INTERGENIC
SBS	Chr8	25108300	T-A	Hetero	INTERGENIC
SBS	Chr8	26487732	C-G	Hetero	UTR_5_PRIME
SBS	Chr9	14768406	C-A	Hetero	INTERGENIC
SBS	Chr10	4301011	C-T	Hetero	INTERGENIC
SBS	Chr10	6961905	G-A	Hetero	INTRON
SBS	Chr10	17106000	T-C	Homo	INTRON
SBS	Chr12	15238112	T-C	Hetero	INTERGENIC
SBS	Chr12	15264163	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	20692	21044	352
Deletion	Chr4	6378295	6378296	1
Deletion	Chr10	20139032	20139042	10
Deletion	Chr7	26342680	26342681	1
Deletion	Chr4	29408681	29408689	8
Deletion	Chr1	31515147	31515164	17
Deletion	Chr4	31540743	31540760	17
Deletion	Chr1	36105625	36105634	9
Deletion	Chr1	36333503	36333505	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	7835545	8161258
Inversion	Chr5	7835559	8161291
Inversion	Chr4	24164933	24602038	OsKitaake04g155100
Inversion	Chr4	24164947	24602047	OsKitaake04g155100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes