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Mutant Information

Mutant Name	FN3434-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3434-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 51

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10051725 T-A Homo NON_SYNONYMOUS_CODING OsKitaake01g127100
SBS Chr1 18448900 T-A Homo INTERGENIC
SBS Chr1 20944778 T-C Homo INTERGENIC
SBS Chr1 24011852 G-A Hetero INTERGENIC
SBS Chr1 24787896 A-G Homo INTERGENIC
SBS Chr1 25833087 G-A Hetero INTERGENIC
SBS Chr2 4972416 C-T Homo INTERGENIC
SBS Chr2 15201545 C-T Homo INTERGENIC
SBS Chr2 29389054 G-T Hetero INTERGENIC
SBS Chr2 35112400 C-T Hetero INTERGENIC
SBS Chr2 35686519 C-T Hetero INTRON
SBS Chr3 3978739 G-C Hetero UTR_3_PRIME
SBS Chr3 8080029 C-A Hetero INTERGENIC
SBS Chr3 9482052 A-T Homo INTERGENIC
SBS Chr3 29311439 C-T Homo INTERGENIC
SBS Chr4 2151949 G-T Homo INTERGENIC
SBS Chr4 2199048 G-A Homo INTERGENIC
SBS Chr4 10042164 T-C Hetero INTRON
SBS Chr4 17127295 C-T Homo INTERGENIC
SBS Chr4 22114691 T-A Hetero UTR_3_PRIME
SBS Chr4 32481809 C-T Homo INTERGENIC
SBS Chr5 10296146 G-A Hetero INTERGENIC
SBS Chr5 11665639 G-A Hetero INTERGENIC
SBS Chr5 20402635 C-A Hetero INTERGENIC
SBS Chr6 8947530 A-G Hetero INTERGENIC
SBS Chr6 14768133 G-A Hetero INTERGENIC
SBS Chr6 18843914 G-A Homo INTERGENIC
SBS Chr6 24393297 T-C Hetero INTERGENIC
SBS Chr6 26577841 G-A Hetero INTERGENIC
SBS Chr7 2403701 T-A Hetero INTERGENIC
SBS Chr7 5790772 G-A Hetero INTERGENIC
SBS Chr7 9650050 C-A Hetero INTERGENIC
SBS Chr7 9650051 A-G Hetero INTERGENIC
SBS Chr7 14818472 C-T Hetero INTERGENIC
SBS Chr8 1863346 G-A Hetero INTERGENIC
SBS Chr9 10489499 T-C Homo INTERGENIC
SBS Chr9 14463129 C-T Hetero INTERGENIC
SBS Chr10 2065586 T-C Hetero INTERGENIC
SBS Chr10 10061688 A-T Hetero INTERGENIC
SBS Chr10 10961390 A-G Hetero INTRON
SBS Chr10 16262138 T-G Homo INTERGENIC
SBS Chr10 16268501 C-A Homo INTERGENIC
SBS Chr10 16268502 G-A Homo INTERGENIC
SBS Chr10 16726499 G-A Hetero INTERGENIC
SBS Chr11 8419355 T-C Hetero INTERGENIC
SBS Chr11 9666230 T-G Homo INTERGENIC
SBS Chr11 10430253 A-G Homo INTERGENIC
SBS Chr11 12254598 G-A Hetero INTERGENIC
SBS Chr11 14792221 G-C Hetero INTERGENIC
SBS Chr12 13546813 G-C Hetero INTERGENIC
SBS Chr12 22069521 C-T Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 1587777 1587779 2
Deletion Chr11 1995898 1995902 4
Deletion Chr2 2094337 2094360 23
Deletion Chr5 4870657 4870667 10
Deletion Chr8 5619755 5619761 6 OsKitaake08g061300
Deletion Chr11 7913832 7913835 3
Deletion Chr11 9600964 9600981 17
Deletion Chr9 14589319 14589321 2
Deletion Chr10 16262114 16262115 1
Deletion Chr3 16586022 16586031 9
Deletion Chr5 19181828 19181831 3
Deletion Chr8 20520154 20520161 7
Deletion Chr1 22096588 22096590 2
Deletion Chr1 22524646 22524647 1
Deletion Chr8 23474563 23474564 1
Deletion Chr1 26240499 26240501 2

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 8532436 8532440 3
Insertion Chr8 111895 111902 6 OsKitaake08g001600

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 25454697 26092270
Inversion Chr1 25454720 25658429 OsKitaake01g249200
Inversion Chr2 29556300 29653723 OsKitaake02g297900
Inversion Chr2 29556307 29653730 OsKitaake02g297900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10051725	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g127100
SBS	Chr1	18448900	T-A	Homo	INTERGENIC
SBS	Chr1	20944778	T-C	Homo	INTERGENIC
SBS	Chr1	24011852	G-A	Hetero	INTERGENIC
SBS	Chr1	24787896	A-G	Homo	INTERGENIC
SBS	Chr1	25833087	G-A	Hetero	INTERGENIC
SBS	Chr2	4972416	C-T	Homo	INTERGENIC
SBS	Chr2	15201545	C-T	Homo	INTERGENIC
SBS	Chr2	29389054	G-T	Hetero	INTERGENIC
SBS	Chr2	35112400	C-T	Hetero	INTERGENIC
SBS	Chr2	35686519	C-T	Hetero	INTRON
SBS	Chr3	3978739	G-C	Hetero	UTR_3_PRIME
SBS	Chr3	8080029	C-A	Hetero	INTERGENIC
SBS	Chr3	9482052	A-T	Homo	INTERGENIC
SBS	Chr3	29311439	C-T	Homo	INTERGENIC
SBS	Chr4	2151949	G-T	Homo	INTERGENIC
SBS	Chr4	2199048	G-A	Homo	INTERGENIC
SBS	Chr4	10042164	T-C	Hetero	INTRON
SBS	Chr4	17127295	C-T	Homo	INTERGENIC
SBS	Chr4	22114691	T-A	Hetero	UTR_3_PRIME
SBS	Chr4	32481809	C-T	Homo	INTERGENIC
SBS	Chr5	10296146	G-A	Hetero	INTERGENIC
SBS	Chr5	11665639	G-A	Hetero	INTERGENIC
SBS	Chr5	20402635	C-A	Hetero	INTERGENIC
SBS	Chr6	8947530	A-G	Hetero	INTERGENIC
SBS	Chr6	14768133	G-A	Hetero	INTERGENIC
SBS	Chr6	18843914	G-A	Homo	INTERGENIC
SBS	Chr6	24393297	T-C	Hetero	INTERGENIC
SBS	Chr6	26577841	G-A	Hetero	INTERGENIC
SBS	Chr7	2403701	T-A	Hetero	INTERGENIC
SBS	Chr7	5790772	G-A	Hetero	INTERGENIC
SBS	Chr7	9650050	C-A	Hetero	INTERGENIC
SBS	Chr7	9650051	A-G	Hetero	INTERGENIC
SBS	Chr7	14818472	C-T	Hetero	INTERGENIC
SBS	Chr8	1863346	G-A	Hetero	INTERGENIC
SBS	Chr9	10489499	T-C	Homo	INTERGENIC
SBS	Chr9	14463129	C-T	Hetero	INTERGENIC
SBS	Chr10	2065586	T-C	Hetero	INTERGENIC
SBS	Chr10	10061688	A-T	Hetero	INTERGENIC
SBS	Chr10	10961390	A-G	Hetero	INTRON
SBS	Chr10	16262138	T-G	Homo	INTERGENIC
SBS	Chr10	16268501	C-A	Homo	INTERGENIC
SBS	Chr10	16268502	G-A	Homo	INTERGENIC
SBS	Chr10	16726499	G-A	Hetero	INTERGENIC
SBS	Chr11	8419355	T-C	Hetero	INTERGENIC
SBS	Chr11	9666230	T-G	Homo	INTERGENIC
SBS	Chr11	10430253	A-G	Homo	INTERGENIC
SBS	Chr11	12254598	G-A	Hetero	INTERGENIC
SBS	Chr11	14792221	G-C	Hetero	INTERGENIC
SBS	Chr12	13546813	G-C	Hetero	INTERGENIC
SBS	Chr12	22069521	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	1587777	1587779	2
Deletion	Chr11	1995898	1995902	4
Deletion	Chr2	2094337	2094360	23
Deletion	Chr5	4870657	4870667	10
Deletion	Chr8	5619755	5619761	6	OsKitaake08g061300
Deletion	Chr11	7913832	7913835	3
Deletion	Chr11	9600964	9600981	17
Deletion	Chr9	14589319	14589321	2
Deletion	Chr10	16262114	16262115	1
Deletion	Chr3	16586022	16586031	9
Deletion	Chr5	19181828	19181831	3
Deletion	Chr8	20520154	20520161	7
Deletion	Chr1	22096588	22096590	2
Deletion	Chr1	22524646	22524647	1
Deletion	Chr8	23474563	23474564	1
Deletion	Chr1	26240499	26240501	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	25454697	26092270
Inversion	Chr1	25454720	25658429	OsKitaake01g249200
Inversion	Chr2	29556300	29653723	OsKitaake02g297900
Inversion	Chr2	29556307	29653730	OsKitaake02g297900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes