Search Kitaake

Mutant Information

Mutant Name	FN3435-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3435-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 24

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8190121 A-T Homo INTERGENIC
SBS Chr1 9957741 G-A Homo INTRON
SBS Chr2 22725945 C-G Hetero INTERGENIC
SBS Chr2 28621893 T-A Hetero INTERGENIC
SBS Chr2 28621894 T-A Hetero INTERGENIC
SBS Chr4 7162479 C-A Hetero INTERGENIC
SBS Chr4 20240192 C-G Homo NON_SYNONYMOUS_CODING OsKitaake04g107300
SBS Chr5 16018183 A-T Hetero INTERGENIC
SBS Chr6 5934629 T-C Hetero INTRON
SBS Chr6 9068528 T-A Hetero INTERGENIC
SBS Chr6 10494740 G-T Hetero INTERGENIC
SBS Chr6 23316007 C-T Hetero INTERGENIC
SBS Chr6 23316012 T-A Hetero INTERGENIC
SBS Chr6 27660890 A-T Hetero INTERGENIC
SBS Chr7 14030261 C-T Homo INTERGENIC
SBS Chr7 23003116 T-C Hetero INTERGENIC
SBS Chr7 24734097 C-T Hetero INTERGENIC
SBS Chr8 10246897 C-T Hetero INTERGENIC
SBS Chr8 11949892 C-T Hetero INTERGENIC
SBS Chr8 19703522 A-G Homo INTERGENIC
SBS Chr11 9107277 C-T Hetero INTERGENIC
SBS Chr11 28012662 G-A Homo INTERGENIC
SBS Chr12 22127523 A-G Hetero INTERGENIC
SBS Chr12 27077199 G-T Hetero INTRON

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 4179552 4179560 8
Deletion Chr7 15049001 15105000 55999 4
Deletion Chr10 16178796 16178798 2
Deletion Chr7 20468001 20509000 40999 2
Deletion Chr5 20759503 20759504 1
Deletion Chr2 21518116 21518126 10
Deletion Chr5 30079001 30112000 32999 2
Deletion Chr5 30132001 30165000 32999
Deletion Chr5 30194001 30204000 9999
Deletion Chr2 34070001 34164000 93999 7

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 36157070 36157072 1
Insertion Chr5 1944627 1944630 2
Insertion Chr1 39162377 39162379 1
Insertion Chr5 30236466 30236474 7
Insertion Chr11 26165991 26165996 4
Insertion Chr12 11705789 11705791 1

Inversions: 10

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 8054330 8600358
Inversion Chr8 16907883 17482711
Inversion Chr8 16907894 17482712
Inversion Chr7 20272180 20853578 OsKitaake07g172100
Inversion Chr7 20272194 20508885
Inversion Chr12 22102050 22144071
Inversion Chr12 22102058 22144084
Inversion Chr5 29918299 30079363 OsKitaake05g289000
Inversion Chr2 34068896 34298012 OsKitaake02g356400
Inversion Chr2 34165148 34298013 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 5084122 Chr3 19275568
Translocation Chr12 24946935 Chr10 7457216

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8190121	A-T	Homo	INTERGENIC
SBS	Chr1	9957741	G-A	Homo	INTRON
SBS	Chr2	22725945	C-G	Hetero	INTERGENIC
SBS	Chr2	28621893	T-A	Hetero	INTERGENIC
SBS	Chr2	28621894	T-A	Hetero	INTERGENIC
SBS	Chr4	7162479	C-A	Hetero	INTERGENIC
SBS	Chr4	20240192	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g107300
SBS	Chr5	16018183	A-T	Hetero	INTERGENIC
SBS	Chr6	5934629	T-C	Hetero	INTRON
SBS	Chr6	9068528	T-A	Hetero	INTERGENIC
SBS	Chr6	10494740	G-T	Hetero	INTERGENIC
SBS	Chr6	23316007	C-T	Hetero	INTERGENIC
SBS	Chr6	23316012	T-A	Hetero	INTERGENIC
SBS	Chr6	27660890	A-T	Hetero	INTERGENIC
SBS	Chr7	14030261	C-T	Homo	INTERGENIC
SBS	Chr7	23003116	T-C	Hetero	INTERGENIC
SBS	Chr7	24734097	C-T	Hetero	INTERGENIC
SBS	Chr8	10246897	C-T	Hetero	INTERGENIC
SBS	Chr8	11949892	C-T	Hetero	INTERGENIC
SBS	Chr8	19703522	A-G	Homo	INTERGENIC
SBS	Chr11	9107277	C-T	Hetero	INTERGENIC
SBS	Chr11	28012662	G-A	Homo	INTERGENIC
SBS	Chr12	22127523	A-G	Hetero	INTERGENIC
SBS	Chr12	27077199	G-T	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	4179552	4179560	8
Deletion	Chr7	15049001	15105000	55999	4
Deletion	Chr10	16178796	16178798	2
Deletion	Chr7	20468001	20509000	40999	2
Deletion	Chr5	20759503	20759504	1
Deletion	Chr2	21518116	21518126	10
Deletion	Chr5	30079001	30112000	32999	2
Deletion	Chr5	30132001	30165000	32999
Deletion	Chr5	30194001	30204000	9999
Deletion	Chr2	34070001	34164000	93999	7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	8054330	8600358
Inversion	Chr8	16907883	17482711
Inversion	Chr8	16907894	17482712
Inversion	Chr7	20272180	20853578	OsKitaake07g172100
Inversion	Chr7	20272194	20508885
Inversion	Chr12	22102050	22144071
Inversion	Chr12	22102058	22144084
Inversion	Chr5	29918299	30079363	OsKitaake05g289000
Inversion	Chr2	34068896	34298012	OsKitaake02g356400
Inversion	Chr2	34165148	34298013	2

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes