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Mutant Information

Mutant Name	FN3436-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3436-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 27

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 9406228 C-G Homo INTERGENIC
SBS Chr2 35370255 C-T Hetero INTRON
SBS Chr2 35565182 C-T Homo SYNONYMOUS_CODING
SBS Chr3 12929082 G-A Hetero INTERGENIC
SBS Chr3 14250821 G-A Hetero INTERGENIC
SBS Chr3 21044892 T-C Hetero INTRON
SBS Chr3 26100259 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g274800
SBS Chr3 26580797 C-T Hetero INTERGENIC
SBS Chr4 4673688 G-A Hetero INTERGENIC
SBS Chr4 8004736 G-A Homo INTERGENIC
SBS Chr4 26812394 G-C Hetero INTERGENIC
SBS Chr5 9161858 G-C Hetero INTERGENIC
SBS Chr6 6249335 A-T Homo UTR_3_PRIME
SBS Chr8 4722089 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake08g053900
SBS Chr8 5361728 C-G Hetero INTERGENIC
SBS Chr8 9922981 C-T Hetero INTERGENIC
SBS Chr8 23905599 T-A Hetero INTERGENIC
SBS Chr8 28365869 C-A Hetero INTRON
SBS Chr9 3177205 C-T Hetero INTERGENIC
SBS Chr10 3205707 G-A Hetero INTERGENIC
SBS Chr10 9847337 T-A Hetero INTERGENIC
SBS Chr10 12508648 C-G Hetero INTERGENIC
SBS Chr11 1003148 A-C Hetero INTERGENIC
SBS Chr11 16010747 T-G Hetero INTRON
SBS Chr11 18966707 C-T Homo INTERGENIC
SBS Chr12 13819356 G-C Hetero INTERGENIC
SBS Chr12 17679719 A-G Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 55193 55196 3
Deletion Chr2 130528 130531 3
Deletion Chr1 523914 523927 13
Deletion Chr5 885215 885216 1
Deletion Chr7 3153835 3153848 13
Deletion Chr8 3878001 3961000 82999 7
Deletion Chr5 4765089 4765099 10
Deletion Chr7 5316716 5316718 2
Deletion Chr3 7265789 7265808 19
Deletion Chr9 11568433 11568439 6
Deletion Chr12 13904985 13904998 13
Deletion Chr12 18674473 18674474 1
Deletion Chr10 19376001 19386000 9999 OsKitaake10g141100
Deletion Chr5 21748159 21748167 8
Deletion Chr1 43438509 43438510 1 OsKitaake01g481000

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 9643192 9643195 2
Insertion Chr2 23011427 23011430 2
Insertion Chr2 27539645 27539648 2
Insertion Chr7 4388652 4388655 2
Insertion Chr11 17135318 17135320 1 OsKitaake11g133750

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 4321436 4816751
Inversion Chr10 5238469 5249236
Inversion Chr10 5238474 5249235
Inversion Chr3 5461671 5489432 OsKitaake03g077400
Inversion Chr3 5463151 5494272 2

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 4433302 Chr3 7069994
Translocation Chr6 4438354 Chr3 7069978 OsKitaake06g061000
Translocation Chr5 24384853 Chr3 5463126 OsKitaake03g077400
Translocation Chr5 24384980 Chr3 5461674 OsKitaake03g077400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	9406228	C-G	Homo	INTERGENIC
SBS	Chr2	35370255	C-T	Hetero	INTRON
SBS	Chr2	35565182	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr3	12929082	G-A	Hetero	INTERGENIC
SBS	Chr3	14250821	G-A	Hetero	INTERGENIC
SBS	Chr3	21044892	T-C	Hetero	INTRON
SBS	Chr3	26100259	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g274800
SBS	Chr3	26580797	C-T	Hetero	INTERGENIC
SBS	Chr4	4673688	G-A	Hetero	INTERGENIC
SBS	Chr4	8004736	G-A	Homo	INTERGENIC
SBS	Chr4	26812394	G-C	Hetero	INTERGENIC
SBS	Chr5	9161858	G-C	Hetero	INTERGENIC
SBS	Chr6	6249335	A-T	Homo	UTR_3_PRIME
SBS	Chr8	4722089	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g053900
SBS	Chr8	5361728	C-G	Hetero	INTERGENIC
SBS	Chr8	9922981	C-T	Hetero	INTERGENIC
SBS	Chr8	23905599	T-A	Hetero	INTERGENIC
SBS	Chr8	28365869	C-A	Hetero	INTRON
SBS	Chr9	3177205	C-T	Hetero	INTERGENIC
SBS	Chr10	3205707	G-A	Hetero	INTERGENIC
SBS	Chr10	9847337	T-A	Hetero	INTERGENIC
SBS	Chr10	12508648	C-G	Hetero	INTERGENIC
SBS	Chr11	1003148	A-C	Hetero	INTERGENIC
SBS	Chr11	16010747	T-G	Hetero	INTRON
SBS	Chr11	18966707	C-T	Homo	INTERGENIC
SBS	Chr12	13819356	G-C	Hetero	INTERGENIC
SBS	Chr12	17679719	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	55193	55196	3
Deletion	Chr2	130528	130531	3
Deletion	Chr1	523914	523927	13
Deletion	Chr5	885215	885216	1
Deletion	Chr7	3153835	3153848	13
Deletion	Chr8	3878001	3961000	82999	7
Deletion	Chr5	4765089	4765099	10
Deletion	Chr7	5316716	5316718	2
Deletion	Chr3	7265789	7265808	19
Deletion	Chr9	11568433	11568439	6
Deletion	Chr12	13904985	13904998	13
Deletion	Chr12	18674473	18674474	1
Deletion	Chr10	19376001	19386000	9999	OsKitaake10g141100
Deletion	Chr5	21748159	21748167	8
Deletion	Chr1	43438509	43438510	1	OsKitaake01g481000

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	4321436	4816751
Inversion	Chr10	5238469	5249236
Inversion	Chr10	5238474	5249235
Inversion	Chr3	5461671	5489432	OsKitaake03g077400
Inversion	Chr3	5463151	5494272	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes