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Mutant Information

Mutant Name	FN3437-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3437-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 63

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11058401 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g135900
SBS Chr1 22022210 G-A Hetero INTERGENIC
SBS Chr1 26263315 C-A Hetero INTERGENIC
SBS Chr2 11651393 G-A Homo INTERGENIC
SBS Chr2 13011654 C-T Homo INTERGENIC
SBS Chr2 26754449 C-T Hetero INTRON
SBS Chr2 26931674 G-T Homo INTERGENIC
SBS Chr2 31033518 C-T Homo INTERGENIC
SBS Chr3 11610158 A-T Homo INTERGENIC
SBS Chr3 28159174 C-T Hetero INTERGENIC
SBS Chr3 33933171 C-T Homo UTR_3_PRIME
SBS Chr4 2036009 G-A Homo SYNONYMOUS_CODING
SBS Chr4 14016997 C-T Homo INTERGENIC
SBS Chr4 15726146 T-A Homo INTERGENIC
SBS Chr4 20776485 A-T Homo INTERGENIC
SBS Chr4 28726237 G-T Homo INTERGENIC
SBS Chr4 29313003 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g223100
SBS Chr4 32674153 C-T Hetero INTERGENIC
SBS Chr4 36868300 T-C Hetero INTERGENIC
SBS Chr5 3928231 T-C Hetero INTRON
SBS Chr5 15407104 C-T Hetero INTERGENIC
SBS Chr5 15504118 C-T Hetero INTERGENIC
SBS Chr5 16228884 T-C Hetero INTERGENIC
SBS Chr5 18631077 C-T Hetero INTERGENIC
SBS Chr5 20916175 C-T Homo INTERGENIC
SBS Chr6 2758796 G-T Hetero UTR_3_PRIME
SBS Chr6 2758798 A-T Hetero UTR_3_PRIME
SBS Chr6 4889797 G-A Hetero INTERGENIC
SBS Chr6 7783293 A-C Hetero SYNONYMOUS_CODING
SBS Chr6 11355001 A-G Hetero INTERGENIC
SBS Chr6 15299657 C-T Hetero INTERGENIC
SBS Chr6 17993689 A-T Hetero INTERGENIC
SBS Chr6 27947877 A-T Hetero INTERGENIC
SBS Chr6 27947878 C-T Hetero INTERGENIC
SBS Chr7 8886090 G-A Homo INTERGENIC
SBS Chr7 11935089 C-T Homo INTERGENIC
SBS Chr7 14975624 G-C Hetero INTERGENIC
SBS Chr7 18134315 A-T Homo INTRON
SBS Chr7 22427140 C-T Hetero INTERGENIC
SBS Chr7 24191260 C-T Hetero INTERGENIC
SBS Chr7 25976733 C-T Hetero UTR_3_PRIME
SBS Chr8 21615665 C-T Hetero INTERGENIC
SBS Chr8 26527411 G-A Hetero INTERGENIC
SBS Chr8 26552739 C-T Hetero INTERGENIC
SBS Chr9 4437692 C-T Homo INTERGENIC
SBS Chr9 13539108 G-A Hetero INTERGENIC
SBS Chr10 5025765 C-T Hetero INTERGENIC
SBS Chr10 13947868 G-A Hetero INTERGENIC
SBS Chr10 22568635 A-T Hetero INTERGENIC
SBS Chr11 1005741 C-T Homo INTERGENIC
SBS Chr11 3057478 G-C Hetero INTERGENIC
SBS Chr11 3058586 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g043000
SBS Chr11 9499039 C-T Hetero INTRON
SBS Chr11 16260727 C-A Hetero INTERGENIC
SBS Chr11 16865923 C-G Homo INTERGENIC
SBS Chr11 21095637 T-A Homo INTERGENIC
SBS Chr12 3265061 G-A Hetero INTERGENIC
SBS Chr12 3491126 T-A Hetero INTERGENIC
SBS Chr12 11115886 A-G Hetero INTERGENIC
SBS Chr12 19585962 T-A Hetero INTERGENIC
SBS Chr12 19585969 G-A Hetero INTERGENIC
SBS Chr12 21756395 C-A Hetero INTRON
SBS Chr12 22472695 G-A Hetero INTRON

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 136019 136033 14
Deletion Chr1 2501001 2513000 11999 OsKitaake01g031800
Deletion Chr5 3771861 3771863 2
Deletion Chr4 11710619 11710646 27
Deletion Chr5 11736983 11736984 1
Deletion Chr4 13750573 13750574 1
Deletion Chr4 14056717 14056722 5
Deletion Chr4 14135173 14135175 2
Deletion Chr8 19464667 19464668 1
Deletion Chr11 20602063 20602079 16
Deletion Chr5 24089300 24089303 3
Deletion Chr12 26260191 26260194 3 OsKitaake12g218000

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 409104 409107 2
Insertion Chr5 16581660 16581663 2
Insertion Chr8 4752819 4752821 1
Insertion Chr8 7329241 7329244 2
Insertion Chr6 100901 100904 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 24293 139759 2
Inversion Chr3 24298 139762 2
Inversion Chr10 4574784 4910575 2
Inversion Chr10 4574807 4910586 2

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 3000630 Chr9 9563202
Translocation Chr12 3000640 Chr10 20621699
Translocation Chr10 19200186 Chr9 9562843 OsKitaake10g138800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11058401	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g135900
SBS	Chr1	22022210	G-A	Hetero	INTERGENIC
SBS	Chr1	26263315	C-A	Hetero	INTERGENIC
SBS	Chr2	11651393	G-A	Homo	INTERGENIC
SBS	Chr2	13011654	C-T	Homo	INTERGENIC
SBS	Chr2	26754449	C-T	Hetero	INTRON
SBS	Chr2	26931674	G-T	Homo	INTERGENIC
SBS	Chr2	31033518	C-T	Homo	INTERGENIC
SBS	Chr3	11610158	A-T	Homo	INTERGENIC
SBS	Chr3	28159174	C-T	Hetero	INTERGENIC
SBS	Chr3	33933171	C-T	Homo	UTR_3_PRIME
SBS	Chr4	2036009	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr4	14016997	C-T	Homo	INTERGENIC
SBS	Chr4	15726146	T-A	Homo	INTERGENIC
SBS	Chr4	20776485	A-T	Homo	INTERGENIC
SBS	Chr4	28726237	G-T	Homo	INTERGENIC
SBS	Chr4	29313003	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g223100
SBS	Chr4	32674153	C-T	Hetero	INTERGENIC
SBS	Chr4	36868300	T-C	Hetero	INTERGENIC
SBS	Chr5	3928231	T-C	Hetero	INTRON
SBS	Chr5	15407104	C-T	Hetero	INTERGENIC
SBS	Chr5	15504118	C-T	Hetero	INTERGENIC
SBS	Chr5	16228884	T-C	Hetero	INTERGENIC
SBS	Chr5	18631077	C-T	Hetero	INTERGENIC
SBS	Chr5	20916175	C-T	Homo	INTERGENIC
SBS	Chr6	2758796	G-T	Hetero	UTR_3_PRIME
SBS	Chr6	2758798	A-T	Hetero	UTR_3_PRIME
SBS	Chr6	4889797	G-A	Hetero	INTERGENIC
SBS	Chr6	7783293	A-C	Hetero	SYNONYMOUS_CODING
SBS	Chr6	11355001	A-G	Hetero	INTERGENIC
SBS	Chr6	15299657	C-T	Hetero	INTERGENIC
SBS	Chr6	17993689	A-T	Hetero	INTERGENIC
SBS	Chr6	27947877	A-T	Hetero	INTERGENIC
SBS	Chr6	27947878	C-T	Hetero	INTERGENIC
SBS	Chr7	8886090	G-A	Homo	INTERGENIC
SBS	Chr7	11935089	C-T	Homo	INTERGENIC
SBS	Chr7	14975624	G-C	Hetero	INTERGENIC
SBS	Chr7	18134315	A-T	Homo	INTRON
SBS	Chr7	22427140	C-T	Hetero	INTERGENIC
SBS	Chr7	24191260	C-T	Hetero	INTERGENIC
SBS	Chr7	25976733	C-T	Hetero	UTR_3_PRIME
SBS	Chr8	21615665	C-T	Hetero	INTERGENIC
SBS	Chr8	26527411	G-A	Hetero	INTERGENIC
SBS	Chr8	26552739	C-T	Hetero	INTERGENIC
SBS	Chr9	4437692	C-T	Homo	INTERGENIC
SBS	Chr9	13539108	G-A	Hetero	INTERGENIC
SBS	Chr10	5025765	C-T	Hetero	INTERGENIC
SBS	Chr10	13947868	G-A	Hetero	INTERGENIC
SBS	Chr10	22568635	A-T	Hetero	INTERGENIC
SBS	Chr11	1005741	C-T	Homo	INTERGENIC
SBS	Chr11	3057478	G-C	Hetero	INTERGENIC
SBS	Chr11	3058586	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g043000
SBS	Chr11	9499039	C-T	Hetero	INTRON
SBS	Chr11	16260727	C-A	Hetero	INTERGENIC
SBS	Chr11	16865923	C-G	Homo	INTERGENIC
SBS	Chr11	21095637	T-A	Homo	INTERGENIC
SBS	Chr12	3265061	G-A	Hetero	INTERGENIC
SBS	Chr12	3491126	T-A	Hetero	INTERGENIC
SBS	Chr12	11115886	A-G	Hetero	INTERGENIC
SBS	Chr12	19585962	T-A	Hetero	INTERGENIC
SBS	Chr12	19585969	G-A	Hetero	INTERGENIC
SBS	Chr12	21756395	C-A	Hetero	INTRON
SBS	Chr12	22472695	G-A	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	136019	136033	14
Deletion	Chr1	2501001	2513000	11999	OsKitaake01g031800
Deletion	Chr5	3771861	3771863	2
Deletion	Chr4	11710619	11710646	27
Deletion	Chr5	11736983	11736984	1
Deletion	Chr4	13750573	13750574	1
Deletion	Chr4	14056717	14056722	5
Deletion	Chr4	14135173	14135175	2
Deletion	Chr8	19464667	19464668	1
Deletion	Chr11	20602063	20602079	16
Deletion	Chr5	24089300	24089303	3
Deletion	Chr12	26260191	26260194	3	OsKitaake12g218000

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	24293	139759	2
Inversion	Chr3	24298	139762	2
Inversion	Chr10	4574784	4910575	2
Inversion	Chr10	4574807	4910586	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes