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Mutant Information

Mutant Name	FN3438-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3438-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 52

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2389038 A-T Homo STOP_GAINED OsKitaake01g029300
SBS Chr1 12137999 A-T Hetero INTERGENIC
SBS Chr1 12138000 A-T Hetero INTERGENIC
SBS Chr1 17426081 G-A Hetero INTERGENIC
SBS Chr1 18693799 C-T Hetero INTRON
SBS Chr1 31454732 G-T Hetero INTERGENIC
SBS Chr1 33113726 T-G Hetero INTERGENIC
SBS Chr1 36445758 G-A Hetero SYNONYMOUS_CODING
SBS Chr2 1849688 A-C Hetero INTERGENIC
SBS Chr2 3689506 A-G Homo INTRON
SBS Chr2 13709352 C-T Homo INTERGENIC
SBS Chr2 22094612 A-G Homo INTERGENIC
SBS Chr2 26753886 T-G Homo INTRON
SBS Chr2 28712786 G-T Homo INTERGENIC
SBS Chr3 12362742 T-C Hetero INTRON
SBS Chr3 13465597 C-T Hetero INTERGENIC
SBS Chr3 17602670 G-A Hetero INTERGENIC
SBS Chr3 19497013 C-T Homo INTERGENIC
SBS Chr3 30165631 T-A Hetero UTR_5_PRIME
SBS Chr3 33269744 C-T Hetero INTRON
SBS Chr3 37447106 T-C Hetero INTERGENIC
SBS Chr4 1304983 G-A Hetero INTERGENIC
SBS Chr4 7231271 C-A Hetero INTERGENIC
SBS Chr5 3951530 T-C Hetero INTERGENIC
SBS Chr5 10737111 T-C Hetero INTERGENIC
SBS Chr5 16694693 G-C Homo INTERGENIC
SBS Chr6 10164919 G-T Hetero INTERGENIC
SBS Chr6 17672632 C-A Hetero INTRON
SBS Chr7 3040170 T-A Hetero INTRON
SBS Chr7 6967394 C-T Hetero INTERGENIC
SBS Chr7 15851088 G-A Hetero INTRON
SBS Chr7 19536775 G-A Hetero INTRON
SBS Chr7 27499594 C-A Hetero INTERGENIC
SBS Chr8 27959150 C-T Hetero INTERGENIC
SBS Chr9 1959320 G-A Hetero INTERGENIC
SBS Chr9 5835311 T-A Hetero INTERGENIC
SBS Chr9 8591872 C-A Hetero INTERGENIC
SBS Chr9 11256777 G-A Hetero INTRON
SBS Chr9 14749256 G-A Hetero INTERGENIC
SBS Chr10 2814884 C-A Homo INTERGENIC
SBS Chr11 616295 C-T Hetero UTR_5_PRIME
SBS Chr11 1312195 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake11g016100
SBS Chr11 1371739 C-T Hetero INTERGENIC
SBS Chr11 14694569 C-T Hetero INTERGENIC
SBS Chr11 18469681 C-T Homo INTERGENIC
SBS Chr11 24150345 A-T Hetero INTERGENIC
SBS Chr11 24688007 A-T Homo INTERGENIC
SBS Chr12 1903373 T-A Homo INTRON
SBS Chr12 4620594 A-T Hetero INTERGENIC
SBS Chr12 9575687 C-T Hetero INTERGENIC
SBS Chr12 10673899 C-T Hetero INTERGENIC
SBS Chr12 11295569 G-T Hetero INTERGENIC

Deletions: 25

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 220474 220475 1
Deletion Chr9 933835 933836 1
Deletion Chr8 1138009 1138024 15
Deletion Chr11 2660423 2660433 10
Deletion Chr2 3798409 3798410 1 OsKitaake02g055000
Deletion Chr7 4091484 4091494 10
Deletion Chr4 4300274 4300280 6 OsKitaake04g021300
Deletion Chr7 5172259 5172286 27
Deletion Chr5 5369087 5369088 1
Deletion Chr8 5400918 5400919 1
Deletion Chr5 12569414 12569416 2
Deletion Chr12 12951001 12960000 8999
Deletion Chr1 13924329 13924331 2 OsKitaake01g160500
Deletion Chr3 15173220 15173221 1
Deletion Chr5 16936846 16936849 3
Deletion Chr9 17885776 17885778 2
Deletion Chr12 22442014 22442022 8
Deletion Chr3 23426889 23426895 6
Deletion Chr1 23989938 23989939 1
Deletion Chr1 24135035 24135037 2
Deletion Chr1 24156010 24156019 9
Deletion Chr12 26751512 26751523 11
Deletion Chr6 28088720 28088725 5
Deletion Chr6 28892881 28892882 1
Deletion Chr3 30704387 30704389 2

Insertions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 11509703 11509706 2
Insertion Chr1 14033328 14033331 2
Insertion Chr1 23306800 23306803 2
Insertion Chr2 24722569 24722572 2
Insertion Chr2 31694539 31694542 2
Insertion Chr3 16105096 16105099 2
Insertion Chr4 1825659 1825662 2
Insertion Chr5 5552618 5552622 3
Insertion Chr5 10605087 10605090 2
Insertion Chr6 11887823 11887826 2
Insertion Chr9 3983173 3983178 4
Insertion Chr12 26130530 26130533 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 12303932 12305082
Inversion Chr5 12303943 12305090
Inversion Chr7 27602080 27751282

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 10734538 Chr2 19295094

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2389038	A-T	Homo	STOP_GAINED	OsKitaake01g029300
SBS	Chr1	12137999	A-T	Hetero	INTERGENIC
SBS	Chr1	12138000	A-T	Hetero	INTERGENIC
SBS	Chr1	17426081	G-A	Hetero	INTERGENIC
SBS	Chr1	18693799	C-T	Hetero	INTRON
SBS	Chr1	31454732	G-T	Hetero	INTERGENIC
SBS	Chr1	33113726	T-G	Hetero	INTERGENIC
SBS	Chr1	36445758	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr2	1849688	A-C	Hetero	INTERGENIC
SBS	Chr2	3689506	A-G	Homo	INTRON
SBS	Chr2	13709352	C-T	Homo	INTERGENIC
SBS	Chr2	22094612	A-G	Homo	INTERGENIC
SBS	Chr2	26753886	T-G	Homo	INTRON
SBS	Chr2	28712786	G-T	Homo	INTERGENIC
SBS	Chr3	12362742	T-C	Hetero	INTRON
SBS	Chr3	13465597	C-T	Hetero	INTERGENIC
SBS	Chr3	17602670	G-A	Hetero	INTERGENIC
SBS	Chr3	19497013	C-T	Homo	INTERGENIC
SBS	Chr3	30165631	T-A	Hetero	UTR_5_PRIME
SBS	Chr3	33269744	C-T	Hetero	INTRON
SBS	Chr3	37447106	T-C	Hetero	INTERGENIC
SBS	Chr4	1304983	G-A	Hetero	INTERGENIC
SBS	Chr4	7231271	C-A	Hetero	INTERGENIC
SBS	Chr5	3951530	T-C	Hetero	INTERGENIC
SBS	Chr5	10737111	T-C	Hetero	INTERGENIC
SBS	Chr5	16694693	G-C	Homo	INTERGENIC
SBS	Chr6	10164919	G-T	Hetero	INTERGENIC
SBS	Chr6	17672632	C-A	Hetero	INTRON
SBS	Chr7	3040170	T-A	Hetero	INTRON
SBS	Chr7	6967394	C-T	Hetero	INTERGENIC
SBS	Chr7	15851088	G-A	Hetero	INTRON
SBS	Chr7	19536775	G-A	Hetero	INTRON
SBS	Chr7	27499594	C-A	Hetero	INTERGENIC
SBS	Chr8	27959150	C-T	Hetero	INTERGENIC
SBS	Chr9	1959320	G-A	Hetero	INTERGENIC
SBS	Chr9	5835311	T-A	Hetero	INTERGENIC
SBS	Chr9	8591872	C-A	Hetero	INTERGENIC
SBS	Chr9	11256777	G-A	Hetero	INTRON
SBS	Chr9	14749256	G-A	Hetero	INTERGENIC
SBS	Chr10	2814884	C-A	Homo	INTERGENIC
SBS	Chr11	616295	C-T	Hetero	UTR_5_PRIME
SBS	Chr11	1312195	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g016100
SBS	Chr11	1371739	C-T	Hetero	INTERGENIC
SBS	Chr11	14694569	C-T	Hetero	INTERGENIC
SBS	Chr11	18469681	C-T	Homo	INTERGENIC
SBS	Chr11	24150345	A-T	Hetero	INTERGENIC
SBS	Chr11	24688007	A-T	Homo	INTERGENIC
SBS	Chr12	1903373	T-A	Homo	INTRON
SBS	Chr12	4620594	A-T	Hetero	INTERGENIC
SBS	Chr12	9575687	C-T	Hetero	INTERGENIC
SBS	Chr12	10673899	C-T	Hetero	INTERGENIC
SBS	Chr12	11295569	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	220474	220475	1
Deletion	Chr9	933835	933836	1
Deletion	Chr8	1138009	1138024	15
Deletion	Chr11	2660423	2660433	10
Deletion	Chr2	3798409	3798410	1	OsKitaake02g055000
Deletion	Chr7	4091484	4091494	10
Deletion	Chr4	4300274	4300280	6	OsKitaake04g021300
Deletion	Chr7	5172259	5172286	27
Deletion	Chr5	5369087	5369088	1
Deletion	Chr8	5400918	5400919	1
Deletion	Chr5	12569414	12569416	2
Deletion	Chr12	12951001	12960000	8999
Deletion	Chr1	13924329	13924331	2	OsKitaake01g160500
Deletion	Chr3	15173220	15173221	1
Deletion	Chr5	16936846	16936849	3
Deletion	Chr9	17885776	17885778	2
Deletion	Chr12	22442014	22442022	8
Deletion	Chr3	23426889	23426895	6
Deletion	Chr1	23989938	23989939	1
Deletion	Chr1	24135035	24135037	2
Deletion	Chr1	24156010	24156019	9
Deletion	Chr12	26751512	26751523	11
Deletion	Chr6	28088720	28088725	5
Deletion	Chr6	28892881	28892882	1
Deletion	Chr3	30704387	30704389	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	12303932	12305082
Inversion	Chr5	12303943	12305090
Inversion	Chr7	27602080	27751282

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes