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| Mutant Information |
|---|
| Mutant Name | FN3439-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3439-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 36
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 19711574 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 29901544 | T-A | Homo | INTERGENIC | |
| SBS | Chr1 | 38956099 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 134894 | G-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g002100 |
| SBS | Chr2 | 2589782 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g036800 |
| SBS | Chr2 | 2589802 | G-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g036800 |
| SBS | Chr2 | 12740038 | T-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 22019614 | T-C | Hetero | UTR_3_PRIME | |
| SBS | Chr2 | 28263717 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 35730227 | G-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 21018890 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 23434229 | C-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 24863866 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 1607325 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 2821216 | T-A | Homo | INTERGENIC | |
| SBS | Chr4 | 7299863 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 27103828 | A-T | Homo | INTERGENIC | |
| SBS | Chr5 | 790758 | G-A | Homo | INTRON | |
| SBS | Chr5 | 23389624 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 11454270 | C-T | Homo | INTRON | |
| SBS | Chr6 | 17816282 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 26531846 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 19988594 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 13370599 | A-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake08g110300 |
| SBS | Chr9 | 13989552 | T-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 18279433 | C-T | Hetero | UTR_3_PRIME | |
| SBS | Chr9 | 18385460 | G-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 7834159 | G-C | Hetero | INTRON | |
| SBS | Chr10 | 20039956 | A-G | Homo | INTERGENIC | |
| SBS | Chr11 | 5430535 | A-G | Hetero | UTR_3_PRIME | |
| SBS | Chr11 | 9706253 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 21545567 | A-C | Homo | INTERGENIC | |
| SBS | Chr11 | 26684350 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 28338351 | G-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 29184314 | C-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 13590617 | C-G | Hetero | INTERGENIC |
Deletions: 8
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr10 | 9780725 | 9780736 | 11 | |
| Deletion | Chr3 | 11305053 | 11305055 | 2 | |
| Deletion | Chr1 | 12975937 | 12975939 | 2 | |
| Deletion | Chr2 | 14994468 | 14994470 | 2 | |
| Deletion | Chr6 | 16090001 | 16121000 | 30999 | OsKitaake06g154900 |
| Deletion | Chr6 | 22704266 | 22704272 | 6 | |
| Deletion | Chr1 | 28054323 | 28054325 | 2 | |
| Deletion | Chr2 | 29915322 | 29915323 | 1 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr5 | 2264541 | 2339030 | OsKitaake05g025300 |
| Inversion | Chr5 | 2264547 | 2339035 | OsKitaake05g025300 |
| Inversion | Chr9 | 6815225 | 6891280 | |
| Inversion | Chr9 | 6815243 | 6891294 |