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Mutant Information

Mutant Name	FN3440-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3440-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 45

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 24234765 G-T Hetero INTERGENIC
SBS Chr1 26392432 C-G Hetero INTERGENIC
SBS Chr1 36902206 T-A Hetero INTRON
SBS Chr2 1297212 A-T Hetero INTRON
SBS Chr2 27584845 C-T Hetero INTERGENIC
SBS Chr3 5597393 T-C Hetero INTRON
SBS Chr3 12599198 A-G Hetero INTERGENIC
SBS Chr3 13650003 T-A Homo INTERGENIC
SBS Chr3 13650004 G-A Homo INTERGENIC
SBS Chr3 18090634 A-G Hetero INTERGENIC
SBS Chr3 34046730 A-T Hetero INTERGENIC
SBS Chr4 2755360 A-T Homo INTERGENIC
SBS Chr4 4179716 G-T Hetero INTERGENIC
SBS Chr4 8752338 C-G Hetero UTR_3_PRIME
SBS Chr4 11491057 C-A Homo INTERGENIC
SBS Chr4 13273323 T-C Hetero INTERGENIC
SBS Chr4 19326879 T-G Homo INTERGENIC
SBS Chr4 21471594 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g120400
SBS Chr4 25935934 T-C Hetero INTERGENIC
SBS Chr5 1547553 C-A Homo INTRON
SBS Chr5 11890308 C-T Hetero INTERGENIC
SBS Chr5 11927108 G-T Hetero INTERGENIC
SBS Chr5 15057769 T-C Hetero INTERGENIC
SBS Chr6 15065790 C-T Hetero INTERGENIC
SBS Chr6 15082690 G-A Hetero INTERGENIC
SBS Chr6 17056813 G-T Hetero INTERGENIC
SBS Chr6 30834809 T-A Homo INTRON
SBS Chr7 10159691 T-C Hetero INTERGENIC
SBS Chr7 11894059 C-T Hetero INTERGENIC
SBS Chr8 3161907 C-T Hetero SYNONYMOUS_CODING
SBS Chr8 4611043 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake08g052000
SBS Chr8 19411118 C-T Hetero INTERGENIC
SBS Chr9 10992223 G-C Hetero INTRON
SBS Chr9 20639647 G-A Homo INTERGENIC
SBS Chr10 9513525 G-T Hetero INTERGENIC
SBS Chr10 18562840 G-C Hetero INTERGENIC
SBS Chr10 20525933 C-A Hetero INTERGENIC
SBS Chr10 20525934 C-G Hetero INTERGENIC
SBS Chr11 557602 G-A Homo INTERGENIC
SBS Chr11 3124573 T-A Homo INTERGENIC
SBS Chr11 22799699 G-A Hetero INTERGENIC
SBS Chr11 23620503 C-T Homo INTERGENIC
SBS Chr12 748868 G-A Homo INTERGENIC
SBS Chr12 19045236 A-T Homo INTRON
SBS Chr12 22510109 G-T Hetero INTERGENIC

Deletions: 26

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 748811 748845 34
Deletion Chr6 2538768 2538771 3
Deletion Chr4 3481608 3481614 6
Deletion Chr7 4000001 4036000 35999 5
Deletion Chr11 5719136 5719141 5
Deletion Chr6 6634378 6634380 2
Deletion Chr9 9589531 9589537 6 OsKitaake09g058400
Deletion Chr9 12566358 12566359 1
Deletion Chr3 14045481 14045482 1 OsKitaake03g183800
Deletion Chr6 15546051 15546071 20
Deletion Chr9 16590301 16590302 1
Deletion Chr5 16707912 16707919 7
Deletion Chr11 17485320 17485321 1
Deletion Chr6 17744008 17744009 1
Deletion Chr7 21689163 21689164 1
Deletion Chr1 22339032 22339051 19
Deletion Chr1 22467016 22467022 6
Deletion Chr10 22953033 22953035 2 OsKitaake10g192100
Deletion Chr4 24285439 24285440 1
Deletion Chr3 25952671 25952673 2
Deletion Chr8 26792197 26792209 12
Deletion Chr6 30428173 30428174 1 OsKitaake06g286000
Deletion Chr2 31741571 31741573 2
Deletion Chr4 34105001 34132000 26999 3
Deletion Chr4 34135001 34180000 44999 3
Deletion Chr3 34596723 34596724 1

Insertions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 34685110 34685112 1
Insertion Chr3 6779438 6779442 3
Insertion Chr4 17681444 17681447 2
Insertion Chr6 21853235 21853238 2
Insertion Chr7 15700486 15700490 3
Insertion Chr10 11050085 11050088 2
Insertion Chr10 17824538 17824541 2
Insertion Chr10 23942949 23942953 3
Insertion Chr12 22079611 22079613 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 1604340 1612944 OsKitaake12g024400
Inversion Chr7 6427165 6864032

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 1604349 Chr4 540632 OsKitaake12g024400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	24234765	G-T	Hetero	INTERGENIC
SBS	Chr1	26392432	C-G	Hetero	INTERGENIC
SBS	Chr1	36902206	T-A	Hetero	INTRON
SBS	Chr2	1297212	A-T	Hetero	INTRON
SBS	Chr2	27584845	C-T	Hetero	INTERGENIC
SBS	Chr3	5597393	T-C	Hetero	INTRON
SBS	Chr3	12599198	A-G	Hetero	INTERGENIC
SBS	Chr3	13650003	T-A	Homo	INTERGENIC
SBS	Chr3	13650004	G-A	Homo	INTERGENIC
SBS	Chr3	18090634	A-G	Hetero	INTERGENIC
SBS	Chr3	34046730	A-T	Hetero	INTERGENIC
SBS	Chr4	2755360	A-T	Homo	INTERGENIC
SBS	Chr4	4179716	G-T	Hetero	INTERGENIC
SBS	Chr4	8752338	C-G	Hetero	UTR_3_PRIME
SBS	Chr4	11491057	C-A	Homo	INTERGENIC
SBS	Chr4	13273323	T-C	Hetero	INTERGENIC
SBS	Chr4	19326879	T-G	Homo	INTERGENIC
SBS	Chr4	21471594	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g120400
SBS	Chr4	25935934	T-C	Hetero	INTERGENIC
SBS	Chr5	1547553	C-A	Homo	INTRON
SBS	Chr5	11890308	C-T	Hetero	INTERGENIC
SBS	Chr5	11927108	G-T	Hetero	INTERGENIC
SBS	Chr5	15057769	T-C	Hetero	INTERGENIC
SBS	Chr6	15065790	C-T	Hetero	INTERGENIC
SBS	Chr6	15082690	G-A	Hetero	INTERGENIC
SBS	Chr6	17056813	G-T	Hetero	INTERGENIC
SBS	Chr6	30834809	T-A	Homo	INTRON
SBS	Chr7	10159691	T-C	Hetero	INTERGENIC
SBS	Chr7	11894059	C-T	Hetero	INTERGENIC
SBS	Chr8	3161907	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr8	4611043	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g052000
SBS	Chr8	19411118	C-T	Hetero	INTERGENIC
SBS	Chr9	10992223	G-C	Hetero	INTRON
SBS	Chr9	20639647	G-A	Homo	INTERGENIC
SBS	Chr10	9513525	G-T	Hetero	INTERGENIC
SBS	Chr10	18562840	G-C	Hetero	INTERGENIC
SBS	Chr10	20525933	C-A	Hetero	INTERGENIC
SBS	Chr10	20525934	C-G	Hetero	INTERGENIC
SBS	Chr11	557602	G-A	Homo	INTERGENIC
SBS	Chr11	3124573	T-A	Homo	INTERGENIC
SBS	Chr11	22799699	G-A	Hetero	INTERGENIC
SBS	Chr11	23620503	C-T	Homo	INTERGENIC
SBS	Chr12	748868	G-A	Homo	INTERGENIC
SBS	Chr12	19045236	A-T	Homo	INTRON
SBS	Chr12	22510109	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	748811	748845	34
Deletion	Chr6	2538768	2538771	3
Deletion	Chr4	3481608	3481614	6
Deletion	Chr7	4000001	4036000	35999	5
Deletion	Chr11	5719136	5719141	5
Deletion	Chr6	6634378	6634380	2
Deletion	Chr9	9589531	9589537	6	OsKitaake09g058400
Deletion	Chr9	12566358	12566359	1
Deletion	Chr3	14045481	14045482	1	OsKitaake03g183800
Deletion	Chr6	15546051	15546071	20
Deletion	Chr9	16590301	16590302	1
Deletion	Chr5	16707912	16707919	7
Deletion	Chr11	17485320	17485321	1
Deletion	Chr6	17744008	17744009	1
Deletion	Chr7	21689163	21689164	1
Deletion	Chr1	22339032	22339051	19
Deletion	Chr1	22467016	22467022	6
Deletion	Chr10	22953033	22953035	2	OsKitaake10g192100
Deletion	Chr4	24285439	24285440	1
Deletion	Chr3	25952671	25952673	2
Deletion	Chr8	26792197	26792209	12
Deletion	Chr6	30428173	30428174	1	OsKitaake06g286000
Deletion	Chr2	31741571	31741573	2
Deletion	Chr4	34105001	34132000	26999	3
Deletion	Chr4	34135001	34180000	44999	3
Deletion	Chr3	34596723	34596724	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	1604340	1612944	OsKitaake12g024400
Inversion	Chr7	6427165	6864032

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes