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Mutant Information

Mutant Name	FN3442-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3442-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 23782634 G-T Hetero INTERGENIC
SBS Chr2 24881801 G-A Homo INTERGENIC
SBS Chr2 33914557 A-T Hetero INTERGENIC
SBS Chr3 10857476 C-A Homo INTERGENIC
SBS Chr3 34732644 A-T Hetero INTRON
SBS Chr4 6187996 G-A Hetero INTERGENIC
SBS Chr4 28706775 C-T Hetero INTERGENIC
SBS Chr4 32143268 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g255500
SBS Chr4 35506358 C-A Hetero INTERGENIC
SBS Chr4 35728729 C-T Hetero SPLICE_SITE_REGION
SBS Chr5 8697200 T-A Hetero INTERGENIC
SBS Chr5 27496094 C-T Homo INTRON
SBS Chr6 18452602 C-T Homo INTRON
SBS Chr6 23622635 G-A Homo INTRON
SBS Chr6 28552720 G-T Hetero INTERGENIC
SBS Chr7 14799386 C-T Hetero INTERGENIC
SBS Chr7 15537265 T-C Hetero INTERGENIC
SBS Chr7 25364335 G-T Homo INTERGENIC
SBS Chr8 7805578 C-A Hetero UTR_5_PRIME
SBS Chr8 18535402 G-A Hetero INTERGENIC
SBS Chr8 23283263 C-T Homo SYNONYMOUS_CODING
SBS Chr9 980950 C-T Hetero INTERGENIC
SBS Chr9 11133709 C-G Hetero INTERGENIC
SBS Chr9 22071770 C-A Hetero INTERGENIC
SBS Chr10 5230403 G-A Hetero INTERGENIC
SBS Chr11 9519061 T-G Homo INTERGENIC
SBS Chr11 9534865 G-A Homo INTERGENIC
SBS Chr11 11088575 G-T Homo INTERGENIC
SBS Chr11 12290773 C-A Homo INTERGENIC
SBS Chr11 15373501 T-A Homo INTERGENIC
SBS Chr12 11478464 C-T Hetero INTERGENIC
SBS Chr12 14371952 G-A Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 719538 719546 8
Deletion Chr1 6766117 6766125 8
Deletion Chr7 7242255 7242266 11
Deletion Chr3 11428232 11428237 5
Deletion Chr6 13016001 13128000 111999 10
Deletion Chr11 13219653 13219657 4
Deletion Chr11 25853001 26158000 304999 32
Deletion Chr4 35926001 36004000 77999 16
Deletion Chr2 37066001 37085000 18999 3
Deletion Chr1 37790618 37790622 4

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 27495919 27495922 2 OsKitaake05g250200
Insertion Chr6 13871280 13871283 2
Insertion Chr8 8874162 8874165 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	23782634	G-T	Hetero	INTERGENIC
SBS	Chr2	24881801	G-A	Homo	INTERGENIC
SBS	Chr2	33914557	A-T	Hetero	INTERGENIC
SBS	Chr3	10857476	C-A	Homo	INTERGENIC
SBS	Chr3	34732644	A-T	Hetero	INTRON
SBS	Chr4	6187996	G-A	Hetero	INTERGENIC
SBS	Chr4	28706775	C-T	Hetero	INTERGENIC
SBS	Chr4	32143268	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g255500
SBS	Chr4	35506358	C-A	Hetero	INTERGENIC
SBS	Chr4	35728729	C-T	Hetero	SPLICE_SITE_REGION
SBS	Chr5	8697200	T-A	Hetero	INTERGENIC
SBS	Chr5	27496094	C-T	Homo	INTRON
SBS	Chr6	18452602	C-T	Homo	INTRON
SBS	Chr6	23622635	G-A	Homo	INTRON
SBS	Chr6	28552720	G-T	Hetero	INTERGENIC
SBS	Chr7	14799386	C-T	Hetero	INTERGENIC
SBS	Chr7	15537265	T-C	Hetero	INTERGENIC
SBS	Chr7	25364335	G-T	Homo	INTERGENIC
SBS	Chr8	7805578	C-A	Hetero	UTR_5_PRIME
SBS	Chr8	18535402	G-A	Hetero	INTERGENIC
SBS	Chr8	23283263	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr9	980950	C-T	Hetero	INTERGENIC
SBS	Chr9	11133709	C-G	Hetero	INTERGENIC
SBS	Chr9	22071770	C-A	Hetero	INTERGENIC
SBS	Chr10	5230403	G-A	Hetero	INTERGENIC
SBS	Chr11	9519061	T-G	Homo	INTERGENIC
SBS	Chr11	9534865	G-A	Homo	INTERGENIC
SBS	Chr11	11088575	G-T	Homo	INTERGENIC
SBS	Chr11	12290773	C-A	Homo	INTERGENIC
SBS	Chr11	15373501	T-A	Homo	INTERGENIC
SBS	Chr12	11478464	C-T	Hetero	INTERGENIC
SBS	Chr12	14371952	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	719538	719546	8
Deletion	Chr1	6766117	6766125	8
Deletion	Chr7	7242255	7242266	11
Deletion	Chr3	11428232	11428237	5
Deletion	Chr6	13016001	13128000	111999	10
Deletion	Chr11	13219653	13219657	4
Deletion	Chr11	25853001	26158000	304999	32
Deletion	Chr4	35926001	36004000	77999	16
Deletion	Chr2	37066001	37085000	18999	3
Deletion	Chr1	37790618	37790622	4

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes