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| Mutant Information |
|---|
| Mutant Name | FN3443-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3443-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 35
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 408183 | A-G | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr2 | 10245901 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 27778182 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 28489083 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 16620108 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 24173746 | A-T | Homo | INTERGENIC | |
| SBS | Chr3 | 31153738 | C-T | Hetero | INTRON | |
| SBS | Chr3 | 35841898 | T-C | Homo | INTERGENIC | |
| SBS | Chr4 | 8255358 | A-C | Homo | INTERGENIC | |
| SBS | Chr4 | 13528286 | T-A | Homo | INTERGENIC | |
| SBS | Chr4 | 34184245 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 931708 | T-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 3006783 | G-A | Hetero | UTR_3_PRIME | |
| SBS | Chr5 | 5404091 | A-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 5645032 | C-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake05g060300 |
| SBS | Chr5 | 5645036 | C-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr5 | 7858669 | G-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 21699379 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 24469714 | C-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake05g198400 |
| SBS | Chr5 | 28764656 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 7140291 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 9171953 | A-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake06g110000 |
| SBS | Chr6 | 11627906 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 20231207 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 26326841 | A-G | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr7 | 25565657 | A-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake07g232300 |
| SBS | Chr8 | 6605446 | G-T | Homo | INTERGENIC | |
| SBS | Chr8 | 16200099 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 23909665 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 14192324 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 20504064 | C-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 22298120 | T-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 240069 | C-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 14255855 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 25947463 | G-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake12g214600 |
Deletions: 17
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 1816370 | 1816376 | 6 | OsKitaake06g021900 |
| Deletion | Chr5 | 6856924 | 6856925 | 1 | |
| Deletion | Chr5 | 6931021 | 6931022 | 1 | |
| Deletion | Chr8 | 9328035 | 9328036 | 1 | |
| Deletion | Chr12 | 10807784 | 10807788 | 4 | |
| Deletion | Chr9 | 10897001 | 10961000 | 63999 | 4 |
| Deletion | Chr5 | 12515534 | 12515689 | 155 | |
| Deletion | Chr12 | 12615220 | 12615221 | 1 | |
| Deletion | Chr6 | 12660296 | 12660303 | 7 | OsKitaake06g135000 |
| Deletion | Chr7 | 12696564 | 12696566 | 2 | |
| Deletion | Chr8 | 16461344 | 16461362 | 18 | |
| Deletion | Chr9 | 22106487 | 22106500 | 13 | OsKitaake09g198800 |
| Deletion | Chr4 | 23021488 | 23021490 | 2 | |
| Deletion | Chr1 | 26000645 | 26000647 | 2 | OsKitaake01g252800 |
| Deletion | Chr5 | 26265881 | 26265882 | 1 | |
| Deletion | Chr2 | 28767684 | 28767685 | 1 | OsKitaake02g289700 |
| Deletion | Chr11 | 29070001 | 29122000 | 51999 | 5 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 21092048 | 21092050 | 1 | OsKitaake05g169700  |
| Insertion | Chr10 | 10460318 | 10460321 | 2 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr7 | 16673160 | Chr6 | 1246598 | |
| Translocation | Chr11 | 27519712 | Chr6 | 27322210 | 2 |
| Translocation | Chr11 | 27520084 | Chr6 | 27322209 | 2 |