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| Mutant Information |
|---|
| Mutant Name | FN3444-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3444-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 39
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr2 | 2860853 | G-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g041000 |
| SBS | Chr2 | 3467664 | G-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 15424799 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 17841914 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 21908422 | A-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 18036158 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 18200009 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 35889512 | T-G | Homo | INTERGENIC | |
| SBS | Chr4 | 10785079 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 12448679 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 16650611 | G-A | Hetero | SPLICE_SITE_REGION | |
| SBS | Chr4 | 25722102 | A-C | Hetero | UTR_5_PRIME | |
| SBS | Chr4 | 28265795 | T-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 10214580 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 24814545 | G-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr6 | 12776461 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 20884497 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 716391 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 22360287 | T-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 22828202 | G-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 22828206 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 27605513 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 1211664 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 3175887 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 6481703 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 8778534 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 25430204 | C-T | Hetero | INTRON | |
| SBS | Chr8 | 25872261 | T-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 28582217 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 6133742 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 12446379 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 12936195 | A-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 16607440 | A-T | Homo | INTERGENIC | |
| SBS | Chr11 | 2066204 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 3531081 | C-T | Hetero | INTRON | |
| SBS | Chr11 | 7848444 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 8306542 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 11049303 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 15701136 | G-A | Hetero | INTERGENIC |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 817139 | 817141 | 2 | |
| Deletion | Chr5 | 990670 | 990672 | 2 | |
| Deletion | Chr7 | 1528348 | 1528352 | 4 | |
| Deletion | Chr4 | 4523934 | 4523937 | 3 | |
| Deletion | Chr12 | 8742830 | 8742832 | 2 | |
| Deletion | Chr1 | 17975490 | 17975493 | 3 | |
| Deletion | Chr6 | 21061083 | 21061084 | 1 | |
| Deletion | Chr6 | 21168221 | 21168223 | 2 | |
| Deletion | Chr9 | 22653955 | 22653956 | 1 | |
| Deletion | Chr1 | 23632388 | 23632390 | 2 | |
| Deletion | Chr11 | 25149815 | 25149818 | 3 | |
| Deletion | Chr4 | 26890220 | 26890221 | 1 | |
| Deletion | Chr2 | 35390344 | 35390354 | 10 | OsKitaake02g371100 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr9 | 19567556 | 19567559 | 2 | |
| Insertion | Chr12 | 11211139 | 11211141 | 1 | |
| Insertion | Chr12 | 14489846 | 14489848 | 1 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr12 | 1699287 | 2385999 | OsKitaake12g025500 |