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| Mutant Information |
|---|
| Mutant Name | FN3445-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3445-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 45
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr2 | 3075492 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 21427905 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 24255292 | A-T | Homo | INTRON | |
| SBS | Chr2 | 31128151 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 31398448 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 4239196 | A-T | Homo | UTR_3_PRIME | |
| SBS | Chr3 | 5646069 | G-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 20637819 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 23576367 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 34422170 | C-A | Hetero | UTR_3_PRIME | |
| SBS | Chr4 | 6817579 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 19109877 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 19300395 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 14513441 | A-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 20421967 | T-A | Homo | INTERGENIC | |
| SBS | Chr5 | 26547021 | A-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 28962189 | C-T | Homo | UTR_5_PRIME | |
| SBS | Chr5 | 29394984 | A-G | Hetero | INTRON | |
| SBS | Chr6 | 29648 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 4765815 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 17773614 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 19836266 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 22251664 | A-G | Hetero | UTR_5_PRIME | |
| SBS | Chr6 | 30778076 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 2305359 | T-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake07g032000 |
| SBS | Chr7 | 9319209 | A-G | Homo | INTERGENIC | |
| SBS | Chr7 | 9388520 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 15551363 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 21255266 | C-T | Homo | INTRON | |
| SBS | Chr7 | 28272473 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 13723925 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 15953439 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 17655991 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 18112720 | G-A | Homo | INTERGENIC | |
| SBS | Chr9 | 5026450 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 8343264 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 15983374 | A-C | Homo | INTERGENIC | |
| SBS | Chr10 | 11588882 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake10g069100 |
| SBS | Chr10 | 13122272 | C-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 15846409 | G-A | Hetero | INTRON | |
| SBS | Chr10 | 17436743 | C-G | Hetero | INTRON | |
| SBS | Chr11 | 2983381 | T-C | Homo | INTERGENIC | |
| SBS | Chr11 | 14674067 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 4624857 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake12g061200 |
| SBS | Chr12 | 23192429 | G-A | Hetero | INTERGENIC |
Deletions: 5
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 114567 | 114569 | 2 | |
| Deletion | Chr11 | 12508945 | 12508946 | 1 | |
| Deletion | Chr12 | 17238951 | 17238953 | 2 | OsKitaake12g126900 |
| Deletion | Chr12 | 25187183 | 25187221 | 38 | |
| Deletion | Chr4 | 31508700 | 31508712 | 12 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 20202830 | 20202835 | 4 | |
| Insertion | Chr6 | 22539232 | 22539235 | 2 | |
| Insertion | Chr8 | 2036713 | 2036716 | 2 | |
| Insertion | Chr11 | 15895417 | 15895420 | 2 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr7 | 12535147 | 12637868 |