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Mutant Information

Mutant Name	FN3446-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3446-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 67

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1836292 G-T Hetero INTERGENIC
SBS Chr1 5237751 T-C Hetero INTERGENIC
SBS Chr1 14449446 A-G Hetero INTRON
SBS Chr1 18133516 T-C Homo INTERGENIC
SBS Chr1 22548071 T-A Hetero INTERGENIC
SBS Chr1 24116091 T-C Hetero INTERGENIC
SBS Chr1 24884333 C-T Hetero INTERGENIC
SBS Chr1 26412378 G-C Hetero UTR_3_PRIME
SBS Chr1 27704687 C-T Hetero INTERGENIC
SBS Chr1 33008540 C-G Homo INTERGENIC
SBS Chr1 33018322 T-C Homo UTR_3_PRIME
SBS Chr2 5356419 A-G Hetero INTRON
SBS Chr2 5524243 G-T Hetero INTERGENIC
SBS Chr2 5679994 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake02g078600
SBS Chr2 8030555 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g103000
SBS Chr2 8988206 G-A Hetero INTERGENIC
SBS Chr2 14041472 A-G Hetero INTERGENIC
SBS Chr3 6886897 G-A Hetero INTERGENIC
SBS Chr3 8233105 A-G Hetero INTERGENIC
SBS Chr3 18499410 A-T Hetero INTRON
SBS Chr3 21623789 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g238000
SBS Chr3 28717444 T-A Hetero INTERGENIC
SBS Chr3 29274361 T-G Homo INTERGENIC
SBS Chr3 31407034 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g331200
SBS Chr3 31407038 G-T Hetero STOP_GAINED OsKitaake03g331200
SBS Chr3 35507710 A-C Hetero INTERGENIC
SBS Chr4 34008 T-A Hetero INTERGENIC
SBS Chr4 10678272 A-G Hetero INTERGENIC
SBS Chr4 27695346 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake04g203900
SBS Chr4 30532226 A-G Hetero INTERGENIC
SBS Chr5 7692000 T-C Hetero INTERGENIC
SBS Chr5 13172383 C-T Hetero INTERGENIC
SBS Chr5 14724647 C-A Hetero INTERGENIC
SBS Chr5 23598789 G-A Hetero INTERGENIC
SBS Chr5 30112733 T-C Hetero INTERGENIC
SBS Chr5 30239412 G-T Hetero INTERGENIC
SBS Chr6 9074800 G-A Hetero INTRON
SBS Chr6 9152698 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake06g109700
SBS Chr6 10059049 C-T Hetero INTERGENIC
SBS Chr6 19248015 A-C Homo INTERGENIC
SBS Chr6 19404764 C-T Hetero INTERGENIC
SBS Chr6 27774883 C-T Hetero INTERGENIC
SBS Chr7 7024265 G-T Hetero SPLICE_SITE_REGION
SBS Chr7 8029906 G-T Hetero INTERGENIC
SBS Chr7 14075999 C-T Hetero SYNONYMOUS_CODING
SBS Chr7 23417153 C-T Hetero INTERGENIC
SBS Chr8 5663532 C-T Hetero INTERGENIC
SBS Chr8 8680917 C-T Hetero INTERGENIC
SBS Chr8 12827571 G-A Hetero INTERGENIC
SBS Chr8 20503436 C-T Hetero INTERGENIC
SBS Chr8 21873189 T-C Hetero INTERGENIC
SBS Chr9 11265764 G-A Hetero INTRON
SBS Chr9 11710410 T-C Hetero INTERGENIC
SBS Chr9 21533985 A-G Hetero INTERGENIC
SBS Chr10 4478444 C-T Hetero INTERGENIC
SBS Chr10 10870593 C-T Hetero INTERGENIC
SBS Chr10 19327553 C-T Hetero INTERGENIC
SBS Chr10 21780439 G-A Hetero INTERGENIC
SBS Chr11 3495810 C-T Hetero INTERGENIC
SBS Chr11 7101533 G-A Hetero INTERGENIC
SBS Chr11 10320999 C-T Hetero INTERGENIC
SBS Chr11 10321000 C-T Hetero INTERGENIC
SBS Chr11 14267907 G-A Hetero INTERGENIC
SBS Chr11 19521832 T-A Hetero INTERGENIC
SBS Chr12 13964856 G-A Hetero INTERGENIC
SBS Chr12 24116153 G-A Homo INTERGENIC
SBS Chr12 26463064 C-A Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 52182 52184 2
Deletion Chr11 10267266 10267275 9
Deletion Chr1 15670576 15670577 1 OsKitaake01g170600
Deletion Chr1 18114162 18114174 12
Deletion Chr6 19193431 19193438 7
Deletion Chr6 23812235 23812242 7
Deletion Chr12 26462510 26462514 4
Deletion Chr1 27075783 27075787 4
Deletion Chr6 27965276 27965285 9
Deletion Chr6 28959758 28959759 1
Deletion Chr1 42386586 42386589 3

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 1998645 2368397 2
Inversion Chr2 1998661 2368599 2
Inversion Chr8 6217870 7007459
Inversion Chr11 6890948 6953485

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1836292	G-T	Hetero	INTERGENIC
SBS	Chr1	5237751	T-C	Hetero	INTERGENIC
SBS	Chr1	14449446	A-G	Hetero	INTRON
SBS	Chr1	18133516	T-C	Homo	INTERGENIC
SBS	Chr1	22548071	T-A	Hetero	INTERGENIC
SBS	Chr1	24116091	T-C	Hetero	INTERGENIC
SBS	Chr1	24884333	C-T	Hetero	INTERGENIC
SBS	Chr1	26412378	G-C	Hetero	UTR_3_PRIME
SBS	Chr1	27704687	C-T	Hetero	INTERGENIC
SBS	Chr1	33008540	C-G	Homo	INTERGENIC
SBS	Chr1	33018322	T-C	Homo	UTR_3_PRIME
SBS	Chr2	5356419	A-G	Hetero	INTRON
SBS	Chr2	5524243	G-T	Hetero	INTERGENIC
SBS	Chr2	5679994	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g078600
SBS	Chr2	8030555	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g103000
SBS	Chr2	8988206	G-A	Hetero	INTERGENIC
SBS	Chr2	14041472	A-G	Hetero	INTERGENIC
SBS	Chr3	6886897	G-A	Hetero	INTERGENIC
SBS	Chr3	8233105	A-G	Hetero	INTERGENIC
SBS	Chr3	18499410	A-T	Hetero	INTRON
SBS	Chr3	21623789	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g238000
SBS	Chr3	28717444	T-A	Hetero	INTERGENIC
SBS	Chr3	29274361	T-G	Homo	INTERGENIC
SBS	Chr3	31407034	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g331200
SBS	Chr3	31407038	G-T	Hetero	STOP_GAINED	OsKitaake03g331200
SBS	Chr3	35507710	A-C	Hetero	INTERGENIC
SBS	Chr4	34008	T-A	Hetero	INTERGENIC
SBS	Chr4	10678272	A-G	Hetero	INTERGENIC
SBS	Chr4	27695346	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g203900
SBS	Chr4	30532226	A-G	Hetero	INTERGENIC
SBS	Chr5	7692000	T-C	Hetero	INTERGENIC
SBS	Chr5	13172383	C-T	Hetero	INTERGENIC
SBS	Chr5	14724647	C-A	Hetero	INTERGENIC
SBS	Chr5	23598789	G-A	Hetero	INTERGENIC
SBS	Chr5	30112733	T-C	Hetero	INTERGENIC
SBS	Chr5	30239412	G-T	Hetero	INTERGENIC
SBS	Chr6	9074800	G-A	Hetero	INTRON
SBS	Chr6	9152698	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g109700
SBS	Chr6	10059049	C-T	Hetero	INTERGENIC
SBS	Chr6	19248015	A-C	Homo	INTERGENIC
SBS	Chr6	19404764	C-T	Hetero	INTERGENIC
SBS	Chr6	27774883	C-T	Hetero	INTERGENIC
SBS	Chr7	7024265	G-T	Hetero	SPLICE_SITE_REGION
SBS	Chr7	8029906	G-T	Hetero	INTERGENIC
SBS	Chr7	14075999	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr7	23417153	C-T	Hetero	INTERGENIC
SBS	Chr8	5663532	C-T	Hetero	INTERGENIC
SBS	Chr8	8680917	C-T	Hetero	INTERGENIC
SBS	Chr8	12827571	G-A	Hetero	INTERGENIC
SBS	Chr8	20503436	C-T	Hetero	INTERGENIC
SBS	Chr8	21873189	T-C	Hetero	INTERGENIC
SBS	Chr9	11265764	G-A	Hetero	INTRON
SBS	Chr9	11710410	T-C	Hetero	INTERGENIC
SBS	Chr9	21533985	A-G	Hetero	INTERGENIC
SBS	Chr10	4478444	C-T	Hetero	INTERGENIC
SBS	Chr10	10870593	C-T	Hetero	INTERGENIC
SBS	Chr10	19327553	C-T	Hetero	INTERGENIC
SBS	Chr10	21780439	G-A	Hetero	INTERGENIC
SBS	Chr11	3495810	C-T	Hetero	INTERGENIC
SBS	Chr11	7101533	G-A	Hetero	INTERGENIC
SBS	Chr11	10320999	C-T	Hetero	INTERGENIC
SBS	Chr11	10321000	C-T	Hetero	INTERGENIC
SBS	Chr11	14267907	G-A	Hetero	INTERGENIC
SBS	Chr11	19521832	T-A	Hetero	INTERGENIC
SBS	Chr12	13964856	G-A	Hetero	INTERGENIC
SBS	Chr12	24116153	G-A	Homo	INTERGENIC
SBS	Chr12	26463064	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	52182	52184	2
Deletion	Chr11	10267266	10267275	9
Deletion	Chr1	15670576	15670577	1	OsKitaake01g170600
Deletion	Chr1	18114162	18114174	12
Deletion	Chr6	19193431	19193438	7
Deletion	Chr6	23812235	23812242	7
Deletion	Chr12	26462510	26462514	4
Deletion	Chr1	27075783	27075787	4
Deletion	Chr6	27965276	27965285	9
Deletion	Chr6	28959758	28959759	1
Deletion	Chr1	42386586	42386589	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	1998645	2368397	2
Inversion	Chr2	1998661	2368599	2
Inversion	Chr8	6217870	7007459
Inversion	Chr11	6890948	6953485

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes