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| Mutant Information |
|---|
| Mutant Name | FN3447-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3447-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 26
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 8825942 | A-G | Homo | INTRON | |
| SBS | Chr1 | 24279799 | T-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 7153784 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 9936957 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 26554047 | G-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 35995695 | C-T | Hetero | INTRON | |
| SBS | Chr3 | 6523661 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 22859653 | G-A | Hetero | INTRON | |
| SBS | Chr3 | 28406672 | C-T | Hetero | UTR_3_PRIME | |
| SBS | Chr4 | 19077960 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 21144032 | A-C | Hetero | INTRON | |
| SBS | Chr5 | 9991303 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 12175571 | T-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 28387022 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 4154015 | A-G | Homo | INTERGENIC | |
| SBS | Chr6 | 14962277 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 17821974 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 20697841 | A-G | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr7 | 8165756 | T-C | Hetero | INTRON | |
| SBS | Chr7 | 19712750 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 20686391 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 14068623 | C-G | Homo | INTERGENIC | |
| SBS | Chr10 | 16734771 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 17854031 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr11 | 24141759 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 29308214 | G-A | Hetero | INTERGENIC |
Deletions: 8
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 1801280 | 1801281 | 1 | |
| Deletion | Chr11 | 1940349 | 1940351 | 2 | |
| Deletion | Chr6 | 2429249 | 2429251 | 2 | OsKitaake06g032000 |
| Deletion | Chr8 | 3526599 | 3526601 | 2 | |
| Deletion | Chr11 | 4424630 | 4424635 | 5 | |
| Deletion | Chr4 | 12833700 | 12833706 | 6 | |
| Deletion | Chr7 | 13722001 | 13730000 | 7999 | |
| Deletion | Chr4 | 29218613 | 29218620 | 7 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 29401543 | 29401548 | 4 | |
| Insertion | Chr8 | 12088494 | 12088502 | 7 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr5 | 4876720 | 4953561 | OsKitaake05g054700 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr3 | 3514287 | Chr2 | 14367639 | OsKitaake03g048700 |
| Translocation | Chr5 | 4876718 | Chr4 | 16911805 | OsKitaake05g054700 |
| Translocation | Chr5 | 4953549 | Chr4 | 16911248 | |
| Translocation | Chr12 | 15019008 | Chr7 | 4813534 | OsKitaake07g058900 |