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Mutant Information

Mutant Name	FN3448-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3448-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 47

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 498114 C-T Hetero INTERGENIC
SBS Chr1 1834481 A-G Hetero INTERGENIC
SBS Chr1 1834482 G-A Hetero INTERGENIC
SBS Chr1 1834766 G-T Hetero INTERGENIC
SBS Chr1 28669602 G-T Homo INTERGENIC
SBS Chr1 28940182 A-T Homo NON_SYNONYMOUS_CODING OsKitaake01g281000
SBS Chr1 36436582 A-T Hetero INTERGENIC
SBS Chr1 40006816 C-A Homo NON_SYNONYMOUS_CODING OsKitaake01g433300
SBS Chr2 12421595 A-T Hetero INTERGENIC
SBS Chr2 13114972 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g146200
SBS Chr2 13114979 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g146200
SBS Chr2 17823209 C-T Hetero INTERGENIC
SBS Chr2 18272068 T-C Hetero INTERGENIC
SBS Chr2 19403348 A-G Hetero INTERGENIC
SBS Chr2 23400971 T-C Hetero INTERGENIC
SBS Chr2 33193209 G-C Hetero INTERGENIC
SBS Chr3 357767 G-A Hetero INTERGENIC
SBS Chr3 14515622 A-T Hetero INTERGENIC
SBS Chr3 16634538 A-T Hetero INTERGENIC
SBS Chr3 19469415 G-A Hetero INTERGENIC
SBS Chr3 28507675 C-T Hetero UTR_3_PRIME
SBS Chr3 30569303 G-T Hetero INTERGENIC
SBS Chr3 34201586 A-T Hetero INTERGENIC
SBS Chr4 1322451 G-T Hetero INTERGENIC
SBS Chr4 16354838 T-C Hetero INTERGENIC
SBS Chr4 17330181 G-T Homo INTERGENIC
SBS Chr4 30467585 C-T Hetero INTERGENIC
SBS Chr5 13960778 A-T Homo INTERGENIC
SBS Chr6 10853130 G-A Homo INTERGENIC
SBS Chr6 11337367 G-A Hetero INTERGENIC
SBS Chr6 12285991 T-C Homo INTERGENIC
SBS Chr7 3538777 G-T Hetero INTERGENIC
SBS Chr7 7732868 G-C Homo INTRON
SBS Chr7 25253528 C-T Hetero INTERGENIC
SBS Chr7 28402718 G-A Homo INTERGENIC
SBS Chr8 17487503 C-T Hetero UTR_3_PRIME
SBS Chr8 25625189 A-G Hetero INTRON
SBS Chr9 5405012 T-C Homo INTERGENIC
SBS Chr9 8244499 A-C Hetero INTERGENIC
SBS Chr10 2859270 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake10g023500
SBS Chr10 5434362 G-T Homo INTERGENIC
SBS Chr10 8789337 A-C Hetero INTERGENIC
SBS Chr10 17063218 G-A Hetero INTERGENIC
SBS Chr11 2546096 C-T Hetero INTERGENIC
SBS Chr11 8569486 C-T Hetero INTERGENIC
SBS Chr12 21531551 A-C Hetero INTERGENIC
SBS Chr12 23699264 G-C Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 1156642 1156851 209
Deletion Chr11 5545709 5545711 2
Deletion Chr7 10734323 10734329 6 OsKitaake07g102200
Deletion Chr2 11480005 11480013 8
Deletion Chr5 12630424 12630429 5
Deletion Chr6 15689380 15689381 1
Deletion Chr1 16059115 16059119 4
Deletion Chr6 17787580 17787582 2
Deletion Chr6 17843095 17843099 4
Deletion Chr5 18123104 18123142 38
Deletion Chr6 23823261 23823270 9 OsKitaake06g210000
Deletion Chr2 25494212 25494215 3
Deletion Chr11 25537531 25537571 40
Deletion Chr2 29725001 29773000 47999 6
Deletion Chr3 37188274 37188279 5
Deletion Chr1 41297835 41297836 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 6777026 6777031 4
Insertion Chr5 19311030 19311033 2
Insertion Chr6 2252084 2252087 2
Insertion Chr11 19013479 19013482 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 281758 Chr1 3379053
Translocation Chr4 316262 Chr2 12535809

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	498114	C-T	Hetero	INTERGENIC
SBS	Chr1	1834481	A-G	Hetero	INTERGENIC
SBS	Chr1	1834482	G-A	Hetero	INTERGENIC
SBS	Chr1	1834766	G-T	Hetero	INTERGENIC
SBS	Chr1	28669602	G-T	Homo	INTERGENIC
SBS	Chr1	28940182	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g281000
SBS	Chr1	36436582	A-T	Hetero	INTERGENIC
SBS	Chr1	40006816	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g433300
SBS	Chr2	12421595	A-T	Hetero	INTERGENIC
SBS	Chr2	13114972	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g146200
SBS	Chr2	13114979	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g146200
SBS	Chr2	17823209	C-T	Hetero	INTERGENIC
SBS	Chr2	18272068	T-C	Hetero	INTERGENIC
SBS	Chr2	19403348	A-G	Hetero	INTERGENIC
SBS	Chr2	23400971	T-C	Hetero	INTERGENIC
SBS	Chr2	33193209	G-C	Hetero	INTERGENIC
SBS	Chr3	357767	G-A	Hetero	INTERGENIC
SBS	Chr3	14515622	A-T	Hetero	INTERGENIC
SBS	Chr3	16634538	A-T	Hetero	INTERGENIC
SBS	Chr3	19469415	G-A	Hetero	INTERGENIC
SBS	Chr3	28507675	C-T	Hetero	UTR_3_PRIME
SBS	Chr3	30569303	G-T	Hetero	INTERGENIC
SBS	Chr3	34201586	A-T	Hetero	INTERGENIC
SBS	Chr4	1322451	G-T	Hetero	INTERGENIC
SBS	Chr4	16354838	T-C	Hetero	INTERGENIC
SBS	Chr4	17330181	G-T	Homo	INTERGENIC
SBS	Chr4	30467585	C-T	Hetero	INTERGENIC
SBS	Chr5	13960778	A-T	Homo	INTERGENIC
SBS	Chr6	10853130	G-A	Homo	INTERGENIC
SBS	Chr6	11337367	G-A	Hetero	INTERGENIC
SBS	Chr6	12285991	T-C	Homo	INTERGENIC
SBS	Chr7	3538777	G-T	Hetero	INTERGENIC
SBS	Chr7	7732868	G-C	Homo	INTRON
SBS	Chr7	25253528	C-T	Hetero	INTERGENIC
SBS	Chr7	28402718	G-A	Homo	INTERGENIC
SBS	Chr8	17487503	C-T	Hetero	UTR_3_PRIME
SBS	Chr8	25625189	A-G	Hetero	INTRON
SBS	Chr9	5405012	T-C	Homo	INTERGENIC
SBS	Chr9	8244499	A-C	Hetero	INTERGENIC
SBS	Chr10	2859270	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g023500
SBS	Chr10	5434362	G-T	Homo	INTERGENIC
SBS	Chr10	8789337	A-C	Hetero	INTERGENIC
SBS	Chr10	17063218	G-A	Hetero	INTERGENIC
SBS	Chr11	2546096	C-T	Hetero	INTERGENIC
SBS	Chr11	8569486	C-T	Hetero	INTERGENIC
SBS	Chr12	21531551	A-C	Hetero	INTERGENIC
SBS	Chr12	23699264	G-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	1156642	1156851	209
Deletion	Chr11	5545709	5545711	2
Deletion	Chr7	10734323	10734329	6	OsKitaake07g102200
Deletion	Chr2	11480005	11480013	8
Deletion	Chr5	12630424	12630429	5
Deletion	Chr6	15689380	15689381	1
Deletion	Chr1	16059115	16059119	4
Deletion	Chr6	17787580	17787582	2
Deletion	Chr6	17843095	17843099	4
Deletion	Chr5	18123104	18123142	38
Deletion	Chr6	23823261	23823270	9	OsKitaake06g210000
Deletion	Chr2	25494212	25494215	3
Deletion	Chr11	25537531	25537571	40
Deletion	Chr2	29725001	29773000	47999	6
Deletion	Chr3	37188274	37188279	5
Deletion	Chr1	41297835	41297836	1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	281758	Chr1	3379053
Translocation	Chr4	316262	Chr2	12535809

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes