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| Mutant Information |
|---|
| Mutant Name | FN3449-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3449-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 32
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 18198338 | G-T | Homo | INTERGENIC | |
| SBS | Chr1 | 34924125 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 36454230 | A-G | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr2 | 29376294 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 33994056 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 9060761 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 16408623 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 6896105 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 19936665 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 15622241 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 16565062 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 29593890 | A-T | Homo | INTERGENIC | |
| SBS | Chr7 | 6154415 | G-C | Homo | INTERGENIC | |
| SBS | Chr7 | 23084161 | T-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 24518514 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 13210341 | C-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 13649571 | G-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 240005 | A-C | Homo | INTERGENIC | |
| SBS | Chr9 | 5399641 | G-T | Homo | INTRON | |
| SBS | Chr9 | 14459657 | G-A | Homo | INTERGENIC | |
| SBS | Chr10 | 1359301 | G-A | Homo | INTERGENIC | |
| SBS | Chr10 | 22667801 | T-A | Homo | INTERGENIC | |
| SBS | Chr10 | 23355862 | T-C | Homo | INTRON | |
| SBS | Chr11 | 6006782 | C-T | Hetero | INTRON | |
| SBS | Chr11 | 11796137 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 12016554 | A-C | Hetero | INTRON | |
| SBS | Chr11 | 18218543 | C-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 24337151 | C-A | Homo | INTERGENIC | |
| SBS | Chr12 | 4315534 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 9860332 | G-T | Homo | INTERGENIC | |
| SBS | Chr12 | 10116238 | G-A | Homo | INTRON | |
| SBS | Chr12 | 22533332 | C-T | Hetero | INTERGENIC |
Deletions: 22
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 53788 | 53820 | 32 | |
| Deletion | Chr5 | 633006 | 633010 | 4 | OsKitaake05g006700 |
| Deletion | Chr8 | 1268070 | 1268073 | 3 | |
| Deletion | Chr2 | 5195365 | 5195385 | 20 | |
| Deletion | Chr9 | 5984011 | 5984019 | 8 | |
| Deletion | Chr2 | 7352088 | 7352093 | 5 | |
| Deletion | Chr7 | 9829791 | 9829798 | 7 | |
| Deletion | Chr4 | 10335753 | 10335754 | 1 | |
| Deletion | Chr7 | 12470613 | 12470620 | 7 | |
| Deletion | Chr4 | 17934587 | 17934596 | 9 | |
| Deletion | Chr11 | 18276650 | 18276673 | 23 | |
| Deletion | Chr4 | 18526922 | 18526953 | 31 | |
| Deletion | Chr4 | 21776364 | 21776365 | 1 | |
| Deletion | Chr7 | 22194459 | 22194464 | 5 | OsKitaake07g187200 |
| Deletion | Chr6 | 22349134 | 22349135 | 1 | |
| Deletion | Chr12 | 22940231 | 22940238 | 7 | |
| Deletion | Chr6 | 24120738 | 24120745 | 7 | |
| Deletion | Chr11 | 27405276 | 27405286 | 10 | |
| Deletion | Chr4 | 30323896 | 30323916 | 20 | |
| Deletion | Chr2 | 30352375 | 30352378 | 3 | |
| Deletion | Chr2 | 35506334 | 35506338 | 4 | |
| Deletion | Chr4 | 36463062 | 36463065 | 3 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 32229616 | 32229619 | 2 | |
| Insertion | Chr6 | 22816774 | 22816777 | 2 | |
| Insertion | Chr6 | 24598872 | 24598875 | 2 | |
| Insertion | Chr9 | 22247724 | 22247727 | 2 |