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| Mutant Information |
|---|
| Mutant Name | FN3450-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3450-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 36
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 5522993 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 6098226 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 10707017 | A-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 11447564 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 12645516 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 25624974 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 34113812 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 39661815 | T-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 5269491 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 6093165 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 14604242 | G-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 33785775 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 17602852 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 27547971 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 10896456 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 14194703 | C-T | Hetero | INTRON | |
| SBS | Chr5 | 15967174 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 17521763 | A-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 26012293 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 8685545 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 8896529 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 8711994 | G-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 12428044 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 13165612 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 14432257 | A-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 4783705 | A-G | Homo | INTERGENIC | |
| SBS | Chr10 | 8784339 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 4565499 | T-G | Hetero | INTRON | |
| SBS | Chr11 | 9631296 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 23845061 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 5867557 | G-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake12g070700 |
| SBS | Chr12 | 7689462 | G-T | Homo | INTERGENIC | |
| SBS | Chr12 | 9229141 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 12071997 | G-T | Homo | INTERGENIC | |
| SBS | Chr12 | 20274255 | T-A | Homo | INTERGENIC | |
| SBS | Chr12 | 26567453 | C-A | Hetero | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 11576 | 11597 | 21 | |
| Deletion | Chr6 | 89043 | 89396 | 353 | |
| Deletion | Chr9 | 6180664 | 6180665 | 1 | |
| Deletion | Chr11 | 9528982 | 9528994 | 12 | |
| Deletion | Chr10 | 11348723 | 11348724 | 1 | |
| Deletion | Chr3 | 14729367 | 14729369 | 2 | OsKitaake03g191500 |
| Deletion | Chr11 | 17962305 | 17962308 | 3 | |
| Deletion | Chr6 | 24628967 | 24628993 | 26 | |
| Deletion | Chr6 | 26363883 | 26363891 | 8 | |
| Deletion | Chr4 | 26541208 | 26541217 | 9 | |
| Deletion | Chr1 | 36530142 | 36530156 | 14 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 36329726 | 36329729 | 2 | |
| Insertion | Chr4 | 9142719 | 9142722 | 2 | |
| Insertion | Chr4 | 35943055 | 35943058 | 2 | |
| Insertion | Chr6 | 781992 | 781994 | 1 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr3 | 3901130 | 4515053 | OsKitaake03g065000 |
| Inversion | Chr3 | 3901137 | 4515082 | OsKitaake03g065000 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr4 | 1248761 | Chr1 | 23178691 | 2 |
| Translocation | Chr4 | 1249552 | Chr1 | 24591788 | 2 |