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Mutant Information

Mutant Name	FN3451-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3451-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 27

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6166741 C-T Hetero INTERGENIC
SBS Chr1 18708796 A-T Homo INTERGENIC
SBS Chr1 38176621 A-G Homo INTRON
SBS Chr2 9473234 C-T Homo INTERGENIC
SBS Chr2 11863070 G-T Hetero INTRON
SBS Chr2 13490022 T-G Hetero INTERGENIC
SBS Chr2 13613656 C-T Hetero INTERGENIC
SBS Chr2 30396495 A-T Hetero INTERGENIC
SBS Chr2 30441171 C-A Homo INTERGENIC
SBS Chr3 1328809 G-T Hetero INTERGENIC
SBS Chr4 1391104 T-A Homo INTERGENIC
SBS Chr4 9983847 C-T Hetero INTERGENIC
SBS Chr4 24356153 C-A Homo INTERGENIC
SBS Chr5 11891587 C-T Hetero INTERGENIC
SBS Chr5 20505744 A-G Homo INTERGENIC
SBS Chr5 22633312 C-T Hetero INTERGENIC
SBS Chr6 7508294 A-G Hetero SYNONYMOUS_CODING
SBS Chr6 8755100 A-G Hetero INTERGENIC
SBS Chr7 10005478 C-A Homo INTERGENIC
SBS Chr7 13773763 G-T Homo INTERGENIC
SBS Chr7 24446758 C-T Hetero INTERGENIC
SBS Chr9 787386 A-T Hetero INTERGENIC
SBS Chr11 9465556 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake11g099100
SBS Chr11 18326089 A-C Hetero INTERGENIC
SBS Chr11 19605836 T-A Hetero INTERGENIC
SBS Chr11 24743165 A-C Hetero INTRON
SBS Chr12 1908988 T-A Homo INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 2420001 2488000 67999 4
Deletion Chr1 3226108 3226200 92
Deletion Chr10 3914001 4214000 299999 24
Deletion Chr10 5135594 5135596 2
Deletion Chr11 5364669 5364670 1
Deletion Chr7 11574412 11574414 2
Deletion Chr11 12482728 12482737 9
Deletion Chr10 13264002 13264003 1
Deletion Chr2 13846242 13846396 154
Deletion Chr7 15671721 15671731 10
Deletion Chr4 17320992 17320997 5
Deletion Chr8 22976558 22976559 1
Deletion Chr4 27569584 27569585 1
Deletion Chr6 28920458 28920465 7

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 27269407 27269411 3

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 10934551 11201052 OsKitaake03g153900
Inversion Chr3 10934561 11201056 OsKitaake03g153900
Inversion Chr4 30421451 31340274 OsKitaake04g234500
Inversion Chr4 30421464 31340287 OsKitaake04g234500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6166741	C-T	Hetero	INTERGENIC
SBS	Chr1	18708796	A-T	Homo	INTERGENIC
SBS	Chr1	38176621	A-G	Homo	INTRON
SBS	Chr2	9473234	C-T	Homo	INTERGENIC
SBS	Chr2	11863070	G-T	Hetero	INTRON
SBS	Chr2	13490022	T-G	Hetero	INTERGENIC
SBS	Chr2	13613656	C-T	Hetero	INTERGENIC
SBS	Chr2	30396495	A-T	Hetero	INTERGENIC
SBS	Chr2	30441171	C-A	Homo	INTERGENIC
SBS	Chr3	1328809	G-T	Hetero	INTERGENIC
SBS	Chr4	1391104	T-A	Homo	INTERGENIC
SBS	Chr4	9983847	C-T	Hetero	INTERGENIC
SBS	Chr4	24356153	C-A	Homo	INTERGENIC
SBS	Chr5	11891587	C-T	Hetero	INTERGENIC
SBS	Chr5	20505744	A-G	Homo	INTERGENIC
SBS	Chr5	22633312	C-T	Hetero	INTERGENIC
SBS	Chr6	7508294	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr6	8755100	A-G	Hetero	INTERGENIC
SBS	Chr7	10005478	C-A	Homo	INTERGENIC
SBS	Chr7	13773763	G-T	Homo	INTERGENIC
SBS	Chr7	24446758	C-T	Hetero	INTERGENIC
SBS	Chr9	787386	A-T	Hetero	INTERGENIC
SBS	Chr11	9465556	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g099100
SBS	Chr11	18326089	A-C	Hetero	INTERGENIC
SBS	Chr11	19605836	T-A	Hetero	INTERGENIC
SBS	Chr11	24743165	A-C	Hetero	INTRON
SBS	Chr12	1908988	T-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	2420001	2488000	67999	4
Deletion	Chr1	3226108	3226200	92
Deletion	Chr10	3914001	4214000	299999	24
Deletion	Chr10	5135594	5135596	2
Deletion	Chr11	5364669	5364670	1
Deletion	Chr7	11574412	11574414	2
Deletion	Chr11	12482728	12482737	9
Deletion	Chr10	13264002	13264003	1
Deletion	Chr2	13846242	13846396	154
Deletion	Chr7	15671721	15671731	10
Deletion	Chr4	17320992	17320997	5
Deletion	Chr8	22976558	22976559	1
Deletion	Chr4	27569584	27569585	1
Deletion	Chr6	28920458	28920465	7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	10934551	11201052	OsKitaake03g153900
Inversion	Chr3	10934561	11201056	OsKitaake03g153900
Inversion	Chr4	30421451	31340274	OsKitaake04g234500
Inversion	Chr4	30421464	31340287	OsKitaake04g234500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes