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Mutant Information

Mutant Name	FN3452-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3452-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 67

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6649601 G-T Hetero INTERGENIC
SBS Chr1 11249066 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g138100
SBS Chr1 19033113 G-T Hetero INTERGENIC
SBS Chr1 20808699 A-C Hetero INTERGENIC
SBS Chr1 29661603 C-A Hetero INTERGENIC
SBS Chr1 31749754 A-G Hetero INTERGENIC
SBS Chr2 10229320 G-A Hetero INTERGENIC
SBS Chr2 10658570 C-T Hetero INTERGENIC
SBS Chr2 11423568 C-T Hetero INTERGENIC
SBS Chr2 17221781 G-A Hetero UTR_3_PRIME
SBS Chr2 23542033 A-G Hetero INTERGENIC
SBS Chr2 31391888 C-T Hetero INTERGENIC
SBS Chr2 33088564 G-A Hetero INTERGENIC
SBS Chr3 5322743 C-G Hetero INTERGENIC
SBS Chr3 17874530 T-A Hetero INTERGENIC
SBS Chr3 19687944 G-A Hetero INTERGENIC
SBS Chr3 19886331 T-C Hetero INTERGENIC
SBS Chr3 26888708 T-C Hetero INTERGENIC
SBS Chr3 28285133 G-A Hetero SYNONYMOUS_CODING
SBS Chr3 33710582 G-A Hetero INTERGENIC
SBS Chr4 3285599 C-T Hetero INTERGENIC
SBS Chr4 11554472 T-C Hetero INTERGENIC
SBS Chr4 11870474 T-C Hetero INTERGENIC
SBS Chr4 14153733 A-T Hetero INTRON
SBS Chr4 19329137 T-C Hetero INTERGENIC
SBS Chr4 30961003 C-G Hetero INTERGENIC
SBS Chr5 7261432 A-G Homo INTERGENIC
SBS Chr5 12472766 C-T Homo INTERGENIC
SBS Chr5 17316380 C-T Hetero INTERGENIC
SBS Chr5 22298047 A-G Homo INTERGENIC
SBS Chr5 29485759 A-G Hetero INTERGENIC
SBS Chr6 8983005 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g108300
SBS Chr6 10457313 T-C Hetero INTERGENIC
SBS Chr6 12953380 G-A Hetero INTERGENIC
SBS Chr6 25659880 G-A Homo INTERGENIC
SBS Chr7 1249263 G-A Homo NON_SYNONYMOUS_CODING OsKitaake07g017900
SBS Chr7 10387893 T-C Hetero INTERGENIC
SBS Chr7 12357451 C-T Homo INTERGENIC
SBS Chr8 2404459 G-A Hetero INTERGENIC
SBS Chr8 5967448 G-T Hetero INTERGENIC
SBS Chr8 7074818 G-A Hetero INTERGENIC
SBS Chr8 12842887 G-C Hetero INTERGENIC
SBS Chr8 17796903 G-A Hetero INTERGENIC
SBS Chr8 21013870 C-A Hetero INTERGENIC
SBS Chr8 27434847 T-C Hetero INTRON
SBS Chr9 249270 G-C Hetero INTERGENIC
SBS Chr9 888752 A-T Homo INTRON
SBS Chr9 1459572 A-T Hetero INTERGENIC
SBS Chr9 5178900 A-G Homo INTERGENIC
SBS Chr9 13062137 A-G Hetero INTERGENIC
SBS Chr10 7451033 C-T Hetero INTERGENIC
SBS Chr10 9468854 T-C Hetero INTERGENIC
SBS Chr10 17570833 A-T Homo INTERGENIC
SBS Chr10 20928451 G-A Homo INTERGENIC
SBS Chr11 3285262 A-G Hetero INTERGENIC
SBS Chr11 6552476 C-G Hetero INTERGENIC
SBS Chr11 10711068 G-T Homo INTERGENIC
SBS Chr11 13463143 A-G Homo INTERGENIC
SBS Chr11 15257188 G-A Homo INTERGENIC
SBS Chr11 15969464 G-T Homo INTERGENIC
SBS Chr11 15969465 G-T Homo INTERGENIC
SBS Chr11 16591603 A-G Hetero INTERGENIC
SBS Chr11 28893870 C-T Hetero SYNONYMOUS_CODING
SBS Chr12 203920 C-T Hetero INTERGENIC
SBS Chr12 7338329 G-A Hetero INTERGENIC
SBS Chr12 11893723 C-T Hetero INTERGENIC
SBS Chr12 20950599 C-T Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 1259116 1259117 1
Deletion Chr5 5009003 5009010 7
Deletion Chr1 8027641 8027646 5
Deletion Chr2 9261001 9323000 61999 4
Deletion Chr6 9539295 9539299 4
Deletion Chr11 14327344 14327361 17
Deletion Chr12 16434702 16434726 24
Deletion Chr5 19156784 19156790 6
Deletion Chr3 21081959 21081960 1
Deletion Chr11 21333569 21333571 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 16285087 16285090 2
Insertion Chr5 53377 53381 3
Insertion Chr7 23857346 23857350 3

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 13165786 13344934
Inversion Chr11 13165799 13344936
Inversion Chr4 16928732 17165600 OsKitaake04g083900
Inversion Chr4 16928737 16930247 OsKitaake04g083000

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 2600046 Chr2 9318877 2
Translocation Chr11 18113440 Chr9 502308
Translocation Chr10 23889130 Chr3 26245532 OsKitaake10g205900
Translocation Chr10 23889384 Chr3 24068162 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6649601	G-T	Hetero	INTERGENIC
SBS	Chr1	11249066	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g138100
SBS	Chr1	19033113	G-T	Hetero	INTERGENIC
SBS	Chr1	20808699	A-C	Hetero	INTERGENIC
SBS	Chr1	29661603	C-A	Hetero	INTERGENIC
SBS	Chr1	31749754	A-G	Hetero	INTERGENIC
SBS	Chr2	10229320	G-A	Hetero	INTERGENIC
SBS	Chr2	10658570	C-T	Hetero	INTERGENIC
SBS	Chr2	11423568	C-T	Hetero	INTERGENIC
SBS	Chr2	17221781	G-A	Hetero	UTR_3_PRIME
SBS	Chr2	23542033	A-G	Hetero	INTERGENIC
SBS	Chr2	31391888	C-T	Hetero	INTERGENIC
SBS	Chr2	33088564	G-A	Hetero	INTERGENIC
SBS	Chr3	5322743	C-G	Hetero	INTERGENIC
SBS	Chr3	17874530	T-A	Hetero	INTERGENIC
SBS	Chr3	19687944	G-A	Hetero	INTERGENIC
SBS	Chr3	19886331	T-C	Hetero	INTERGENIC
SBS	Chr3	26888708	T-C	Hetero	INTERGENIC
SBS	Chr3	28285133	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr3	33710582	G-A	Hetero	INTERGENIC
SBS	Chr4	3285599	C-T	Hetero	INTERGENIC
SBS	Chr4	11554472	T-C	Hetero	INTERGENIC
SBS	Chr4	11870474	T-C	Hetero	INTERGENIC
SBS	Chr4	14153733	A-T	Hetero	INTRON
SBS	Chr4	19329137	T-C	Hetero	INTERGENIC
SBS	Chr4	30961003	C-G	Hetero	INTERGENIC
SBS	Chr5	7261432	A-G	Homo	INTERGENIC
SBS	Chr5	12472766	C-T	Homo	INTERGENIC
SBS	Chr5	17316380	C-T	Hetero	INTERGENIC
SBS	Chr5	22298047	A-G	Homo	INTERGENIC
SBS	Chr5	29485759	A-G	Hetero	INTERGENIC
SBS	Chr6	8983005	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g108300
SBS	Chr6	10457313	T-C	Hetero	INTERGENIC
SBS	Chr6	12953380	G-A	Hetero	INTERGENIC
SBS	Chr6	25659880	G-A	Homo	INTERGENIC
SBS	Chr7	1249263	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g017900
SBS	Chr7	10387893	T-C	Hetero	INTERGENIC
SBS	Chr7	12357451	C-T	Homo	INTERGENIC
SBS	Chr8	2404459	G-A	Hetero	INTERGENIC
SBS	Chr8	5967448	G-T	Hetero	INTERGENIC
SBS	Chr8	7074818	G-A	Hetero	INTERGENIC
SBS	Chr8	12842887	G-C	Hetero	INTERGENIC
SBS	Chr8	17796903	G-A	Hetero	INTERGENIC
SBS	Chr8	21013870	C-A	Hetero	INTERGENIC
SBS	Chr8	27434847	T-C	Hetero	INTRON
SBS	Chr9	249270	G-C	Hetero	INTERGENIC
SBS	Chr9	888752	A-T	Homo	INTRON
SBS	Chr9	1459572	A-T	Hetero	INTERGENIC
SBS	Chr9	5178900	A-G	Homo	INTERGENIC
SBS	Chr9	13062137	A-G	Hetero	INTERGENIC
SBS	Chr10	7451033	C-T	Hetero	INTERGENIC
SBS	Chr10	9468854	T-C	Hetero	INTERGENIC
SBS	Chr10	17570833	A-T	Homo	INTERGENIC
SBS	Chr10	20928451	G-A	Homo	INTERGENIC
SBS	Chr11	3285262	A-G	Hetero	INTERGENIC
SBS	Chr11	6552476	C-G	Hetero	INTERGENIC
SBS	Chr11	10711068	G-T	Homo	INTERGENIC
SBS	Chr11	13463143	A-G	Homo	INTERGENIC
SBS	Chr11	15257188	G-A	Homo	INTERGENIC
SBS	Chr11	15969464	G-T	Homo	INTERGENIC
SBS	Chr11	15969465	G-T	Homo	INTERGENIC
SBS	Chr11	16591603	A-G	Hetero	INTERGENIC
SBS	Chr11	28893870	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr12	203920	C-T	Hetero	INTERGENIC
SBS	Chr12	7338329	G-A	Hetero	INTERGENIC
SBS	Chr12	11893723	C-T	Hetero	INTERGENIC
SBS	Chr12	20950599	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	1259116	1259117	1
Deletion	Chr5	5009003	5009010	7
Deletion	Chr1	8027641	8027646	5
Deletion	Chr2	9261001	9323000	61999	4
Deletion	Chr6	9539295	9539299	4
Deletion	Chr11	14327344	14327361	17
Deletion	Chr12	16434702	16434726	24
Deletion	Chr5	19156784	19156790	6
Deletion	Chr3	21081959	21081960	1
Deletion	Chr11	21333569	21333571	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	13165786	13344934
Inversion	Chr11	13165799	13344936
Inversion	Chr4	16928732	17165600	OsKitaake04g083900
Inversion	Chr4	16928737	16930247	OsKitaake04g083000

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes