Search Kitaake

Mutant Information

Mutant Name	FN3453-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3453-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1590530 C-A Hetero INTERGENIC
SBS Chr1 9480724 C-T Hetero INTERGENIC
SBS Chr1 18069867 A-G Hetero UTR_3_PRIME
SBS Chr1 28600491 C-T Homo INTERGENIC
SBS Chr1 32286518 C-T Hetero INTERGENIC
SBS Chr2 29238325 T-A Hetero INTERGENIC
SBS Chr3 17791828 C-A Homo INTERGENIC
SBS Chr4 14863642 A-T Hetero INTERGENIC
SBS Chr4 26997457 A-T Hetero INTERGENIC
SBS Chr4 32218692 G-T Hetero INTERGENIC
SBS Chr5 17782692 C-T Hetero INTERGENIC
SBS Chr6 15600720 C-T Hetero INTERGENIC
SBS Chr6 21703218 G-A Hetero INTRON
SBS Chr6 25079918 C-T Hetero INTERGENIC
SBS Chr7 4170080 A-G Hetero INTERGENIC
SBS Chr7 8250930 C-T Hetero INTERGENIC
SBS Chr7 23898692 G-A Hetero INTERGENIC
SBS Chr7 25002512 G-A Hetero INTERGENIC
SBS Chr8 14088816 C-T Homo INTERGENIC
SBS Chr9 2638337 T-A Homo INTERGENIC
SBS Chr9 21237076 C-G Hetero INTERGENIC
SBS Chr10 614140 C-T Hetero INTERGENIC
SBS Chr10 8347877 A-T Hetero INTERGENIC
SBS Chr10 23053852 T-C Hetero INTERGENIC
SBS Chr11 5790517 G-T Hetero INTERGENIC
SBS Chr11 20521096 G-A Hetero INTERGENIC
SBS Chr11 23427200 G-A Hetero INTERGENIC
SBS Chr11 24305672 T-A Hetero INTERGENIC
SBS Chr11 28781837 G-A Hetero INTRON
SBS Chr12 11134910 A-C Homo INTERGENIC
SBS Chr12 21562168 C-G Hetero INTERGENIC
SBS Chr12 25656146 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake12g211300

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 3325205 3325210 5
Deletion Chr7 5430679 5430685 6
Deletion Chr5 9464918 9464922 4
Deletion Chr12 10249094 10249096 2
Deletion Chr11 10258949 10258950 1
Deletion Chr7 14318001 14349000 30999 4
Deletion Chr10 16637530 16637576 46
Deletion Chr5 16973751 16973761 10
Deletion Chr4 20827541 20827555 14
Deletion Chr7 26456952 26456953 1
Deletion Chr3 36847944 36847946 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 23591868 23591871 2
Insertion Chr1 32299490 32299493 2
Insertion Chr7 5378127 5378130 2

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 8189169 9101198 2
Inversion Chr2 8189325 9101197 2
Inversion Chr6 10815490 10911134
Inversion Chr6 10815497 10911138
Inversion Chr4 15205856 15604313
Inversion Chr4 15205872 15604322

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 7080147 Chr5 26952856 2
Translocation Chr9 7080152 Chr5 26953790 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1590530	C-A	Hetero	INTERGENIC
SBS	Chr1	9480724	C-T	Hetero	INTERGENIC
SBS	Chr1	18069867	A-G	Hetero	UTR_3_PRIME
SBS	Chr1	28600491	C-T	Homo	INTERGENIC
SBS	Chr1	32286518	C-T	Hetero	INTERGENIC
SBS	Chr2	29238325	T-A	Hetero	INTERGENIC
SBS	Chr3	17791828	C-A	Homo	INTERGENIC
SBS	Chr4	14863642	A-T	Hetero	INTERGENIC
SBS	Chr4	26997457	A-T	Hetero	INTERGENIC
SBS	Chr4	32218692	G-T	Hetero	INTERGENIC
SBS	Chr5	17782692	C-T	Hetero	INTERGENIC
SBS	Chr6	15600720	C-T	Hetero	INTERGENIC
SBS	Chr6	21703218	G-A	Hetero	INTRON
SBS	Chr6	25079918	C-T	Hetero	INTERGENIC
SBS	Chr7	4170080	A-G	Hetero	INTERGENIC
SBS	Chr7	8250930	C-T	Hetero	INTERGENIC
SBS	Chr7	23898692	G-A	Hetero	INTERGENIC
SBS	Chr7	25002512	G-A	Hetero	INTERGENIC
SBS	Chr8	14088816	C-T	Homo	INTERGENIC
SBS	Chr9	2638337	T-A	Homo	INTERGENIC
SBS	Chr9	21237076	C-G	Hetero	INTERGENIC
SBS	Chr10	614140	C-T	Hetero	INTERGENIC
SBS	Chr10	8347877	A-T	Hetero	INTERGENIC
SBS	Chr10	23053852	T-C	Hetero	INTERGENIC
SBS	Chr11	5790517	G-T	Hetero	INTERGENIC
SBS	Chr11	20521096	G-A	Hetero	INTERGENIC
SBS	Chr11	23427200	G-A	Hetero	INTERGENIC
SBS	Chr11	24305672	T-A	Hetero	INTERGENIC
SBS	Chr11	28781837	G-A	Hetero	INTRON
SBS	Chr12	11134910	A-C	Homo	INTERGENIC
SBS	Chr12	21562168	C-G	Hetero	INTERGENIC
SBS	Chr12	25656146	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g211300

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	3325205	3325210	5
Deletion	Chr7	5430679	5430685	6
Deletion	Chr5	9464918	9464922	4
Deletion	Chr12	10249094	10249096	2
Deletion	Chr11	10258949	10258950	1
Deletion	Chr7	14318001	14349000	30999	4
Deletion	Chr10	16637530	16637576	46
Deletion	Chr5	16973751	16973761	10
Deletion	Chr4	20827541	20827555	14
Deletion	Chr7	26456952	26456953	1
Deletion	Chr3	36847944	36847946	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	8189169	9101198	2
Inversion	Chr2	8189325	9101197	2
Inversion	Chr6	10815490	10911134
Inversion	Chr6	10815497	10911138
Inversion	Chr4	15205856	15604313
Inversion	Chr4	15205872	15604322

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes