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Mutant Information

Mutant Name	FN3454-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3454-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3100898 G-T Hetero INTERGENIC
SBS Chr2 4476372 C-T Homo INTERGENIC
SBS Chr2 11944871 T-C Hetero INTERGENIC
SBS Chr2 24159998 C-T Hetero INTERGENIC
SBS Chr2 24343485 A-G Hetero INTRON
SBS Chr3 822462 G-A Hetero INTERGENIC
SBS Chr3 10187232 G-A Homo INTERGENIC
SBS Chr3 11162387 T-A Homo INTERGENIC
SBS Chr3 26778308 G-T Hetero INTERGENIC
SBS Chr4 1554625 G-A Hetero INTERGENIC
SBS Chr4 4356752 G-T Homo INTERGENIC
SBS Chr4 11608549 C-T Homo INTERGENIC
SBS Chr4 17816784 C-T Hetero INTERGENIC
SBS Chr4 25122504 G-A Hetero INTERGENIC
SBS Chr4 26599194 C-A Hetero INTERGENIC
SBS Chr4 30905727 G-T Hetero INTERGENIC
SBS Chr4 32729443 C-T Homo INTERGENIC
SBS Chr5 4422441 T-G Hetero INTERGENIC
SBS Chr6 1630087 C-G Hetero INTRON
SBS Chr7 6802145 A-G Hetero INTERGENIC
SBS Chr7 8420706 G-T Hetero INTRON
SBS Chr7 8420707 C-T Hetero INTRON
SBS Chr7 8907674 T-C Hetero SYNONYMOUS_CODING
SBS Chr8 13210087 C-T Homo INTERGENIC
SBS Chr8 15111770 C-T Hetero INTERGENIC
SBS Chr8 16517546 A-T Hetero INTERGENIC
SBS Chr9 2912040 G-A Hetero INTERGENIC
SBS Chr9 3799486 G-A Hetero INTERGENIC
SBS Chr9 13067394 T-C Homo INTERGENIC
SBS Chr9 15735498 T-A Homo INTRON
SBS Chr11 12589726 C-T Hetero INTERGENIC
SBS Chr11 17244218 T-C Hetero INTERGENIC
SBS Chr11 28165037 A-T Hetero UTR_3_PRIME
SBS Chr11 29515440 G-T Homo UTR_5_PRIME
SBS Chr12 10746294 C-T Homo INTERGENIC
SBS Chr12 17616426 T-A Hetero INTERGENIC
SBS Chr12 25919118 C-T Homo NON_SYNONYMOUS_CODING OsKitaake12g214200

Deletions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 6152043 6152044 1
Deletion Chr6 13452001 13521000 68999 2
Deletion Chr6 13591206 13591207 1
Deletion Chr2 13874503 13874504 1
Deletion Chr7 14736625 14736627 2
Deletion Chr6 17506689 17506694 5
Deletion Chr6 21987628 21987633 5

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 8760976 8809796 OsKitaake05g083400
Inversion Chr5 8760987 8809799 OsKitaake05g083400
Inversion Chr6 13454272 13546206 OsKitaake06g141800
Inversion Chr6 13520852 13546210
Inversion Chr6 25326673 25831953 OsKitaake06g229800
Inversion Chr6 25326683 25444820 OsKitaake06g225900

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 9461540 Chr8 22684113
Translocation Chr11 9462897 Chr8 22684116 OsKitaake11g099100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3100898	G-T	Hetero	INTERGENIC
SBS	Chr2	4476372	C-T	Homo	INTERGENIC
SBS	Chr2	11944871	T-C	Hetero	INTERGENIC
SBS	Chr2	24159998	C-T	Hetero	INTERGENIC
SBS	Chr2	24343485	A-G	Hetero	INTRON
SBS	Chr3	822462	G-A	Hetero	INTERGENIC
SBS	Chr3	10187232	G-A	Homo	INTERGENIC
SBS	Chr3	11162387	T-A	Homo	INTERGENIC
SBS	Chr3	26778308	G-T	Hetero	INTERGENIC
SBS	Chr4	1554625	G-A	Hetero	INTERGENIC
SBS	Chr4	4356752	G-T	Homo	INTERGENIC
SBS	Chr4	11608549	C-T	Homo	INTERGENIC
SBS	Chr4	17816784	C-T	Hetero	INTERGENIC
SBS	Chr4	25122504	G-A	Hetero	INTERGENIC
SBS	Chr4	26599194	C-A	Hetero	INTERGENIC
SBS	Chr4	30905727	G-T	Hetero	INTERGENIC
SBS	Chr4	32729443	C-T	Homo	INTERGENIC
SBS	Chr5	4422441	T-G	Hetero	INTERGENIC
SBS	Chr6	1630087	C-G	Hetero	INTRON
SBS	Chr7	6802145	A-G	Hetero	INTERGENIC
SBS	Chr7	8420706	G-T	Hetero	INTRON
SBS	Chr7	8420707	C-T	Hetero	INTRON
SBS	Chr7	8907674	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr8	13210087	C-T	Homo	INTERGENIC
SBS	Chr8	15111770	C-T	Hetero	INTERGENIC
SBS	Chr8	16517546	A-T	Hetero	INTERGENIC
SBS	Chr9	2912040	G-A	Hetero	INTERGENIC
SBS	Chr9	3799486	G-A	Hetero	INTERGENIC
SBS	Chr9	13067394	T-C	Homo	INTERGENIC
SBS	Chr9	15735498	T-A	Homo	INTRON
SBS	Chr11	12589726	C-T	Hetero	INTERGENIC
SBS	Chr11	17244218	T-C	Hetero	INTERGENIC
SBS	Chr11	28165037	A-T	Hetero	UTR_3_PRIME
SBS	Chr11	29515440	G-T	Homo	UTR_5_PRIME
SBS	Chr12	10746294	C-T	Homo	INTERGENIC
SBS	Chr12	17616426	T-A	Hetero	INTERGENIC
SBS	Chr12	25919118	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g214200

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	6152043	6152044	1
Deletion	Chr6	13452001	13521000	68999	2
Deletion	Chr6	13591206	13591207	1
Deletion	Chr2	13874503	13874504	1
Deletion	Chr7	14736625	14736627	2
Deletion	Chr6	17506689	17506694	5
Deletion	Chr6	21987628	21987633	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	8760976	8809796	OsKitaake05g083400
Inversion	Chr5	8760987	8809799	OsKitaake05g083400
Inversion	Chr6	13454272	13546206	OsKitaake06g141800
Inversion	Chr6	13520852	13546210
Inversion	Chr6	25326673	25831953	OsKitaake06g229800
Inversion	Chr6	25326683	25444820	OsKitaake06g225900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes