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Mutant Information

Mutant Name	FN3455-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3455-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 58

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6296061 G-C Homo NON_SYNONYMOUS_CODING OsKitaake01g079800
SBS Chr1 6493297 A-C Homo INTRON
SBS Chr1 10502333 C-T Hetero INTERGENIC
SBS Chr1 13656337 A-G Hetero INTERGENIC
SBS Chr1 14565919 G-C Hetero INTERGENIC
SBS Chr1 20015619 G-A Hetero INTERGENIC
SBS Chr1 25985347 T-A Homo INTERGENIC
SBS Chr1 39230564 C-A Hetero INTERGENIC
SBS Chr2 217707 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g003700
SBS Chr2 3681906 G-A Hetero INTRON
SBS Chr2 4742888 T-C Homo INTRON
SBS Chr2 15328227 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g159800
SBS Chr3 1449769 C-A Hetero SYNONYMOUS_CODING
SBS Chr3 3064048 C-T Hetero UTR_3_PRIME
SBS Chr3 12821704 G-C Homo INTRON
SBS Chr3 17652710 C-T Hetero INTERGENIC
SBS Chr3 19864578 C-T Hetero INTERGENIC
SBS Chr3 31511893 T-A Homo INTERGENIC
SBS Chr4 2293688 T-A Hetero INTERGENIC
SBS Chr4 9485757 G-T Hetero INTERGENIC
SBS Chr4 10573680 T-C Hetero INTERGENIC
SBS Chr4 13259864 C-A Hetero INTERGENIC
SBS Chr4 16146996 C-T Hetero INTERGENIC
SBS Chr4 23483081 T-A Homo INTERGENIC
SBS Chr5 650247 C-T Hetero UTR_5_PRIME
SBS Chr5 12208052 C-A Hetero INTERGENIC
SBS Chr6 3544504 A-G Hetero INTERGENIC
SBS Chr6 6026780 T-C Homo INTRON
SBS Chr6 9050924 G-A Hetero INTERGENIC
SBS Chr6 10125000 C-T Hetero INTRON
SBS Chr6 24252042 G-A Hetero INTERGENIC
SBS Chr6 26742311 T-C Hetero UTR_3_PRIME
SBS Chr7 6426684 C-T Homo INTERGENIC
SBS Chr7 8011949 C-T Homo INTERGENIC
SBS Chr7 8307782 G-T Hetero INTERGENIC
SBS Chr7 11926790 G-A Hetero INTERGENIC
SBS Chr7 26541586 G-T Hetero INTERGENIC
SBS Chr8 3412344 T-C Homo INTERGENIC
SBS Chr8 8858192 A-G Homo INTERGENIC
SBS Chr8 9645638 T-A Homo INTERGENIC
SBS Chr8 14019511 C-G Homo UTR_5_PRIME
SBS Chr8 24949264 G-A Hetero INTERGENIC
SBS Chr8 24949265 G-T Hetero INTERGENIC
SBS Chr8 26001661 T-A Hetero INTERGENIC
SBS Chr8 26001665 G-A Hetero INTERGENIC
SBS Chr9 3361085 G-A Homo INTERGENIC
SBS Chr9 17692090 T-A Hetero INTERGENIC
SBS Chr9 19550461 C-T Hetero INTERGENIC
SBS Chr9 21972770 C-T Hetero INTERGENIC
SBS Chr10 11204787 G-T Homo INTERGENIC
SBS Chr10 18100743 A-G Hetero INTERGENIC
SBS Chr11 2409213 C-T Hetero INTERGENIC
SBS Chr11 6641829 A-T Hetero INTRON
SBS Chr11 25892725 T-G Hetero INTERGENIC
SBS Chr12 4442564 C-G Homo INTERGENIC
SBS Chr12 11387850 G-A Hetero INTERGENIC
SBS Chr12 21506554 G-A Hetero INTERGENIC
SBS Chr12 22476135 C-T Homo INTRON

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 95794 95796 2
Deletion Chr5 797378 797385 7 OsKitaake05g009700
Deletion Chr6 1513113 1513115 2
Deletion Chr1 4053688 4054009 321
Deletion Chr7 4270604 4270614 10
Deletion Chr1 9330585 9330587 2
Deletion Chr5 10973960 10973961 1
Deletion Chr8 11250169 11250173 4
Deletion Chr3 15342486 15342489 3
Deletion Chr2 15582630 15582631 1
Deletion Chr3 15857579 15857581 2
Deletion Chr6 15947631 15947635 4
Deletion Chr8 16319001 16336000 16999 OsKitaake08g125350
Deletion Chr3 25901312 25901322 10
Deletion Chr6 27205001 27259000 53999 4
Deletion Chr4 27518311 27518313 2
Deletion Chr11 27563269 27563270 1
Deletion Chr4 27585372 27585373 1
Deletion Chr7 28652947 28652956 9
Deletion Chr4 30827917 30827918 1
Deletion Chr2 32347475 32347479 4

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 20291898 20291901 2
Insertion Chr10 13926300 13926304 3
Insertion Chr11 20061826 20061829 2
Insertion Chr8 12243254 12243256 1

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 4157248 Chr6 4040892 OsKitaake12g056800
Translocation Chr12 4185837 Chr6 4040891 OsKitaake12g057400
Translocation Chr12 4194659 Chr5 10585377
Translocation Chr12 4195624 Chr11 3535532 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6296061	G-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g079800
SBS	Chr1	6493297	A-C	Homo	INTRON
SBS	Chr1	10502333	C-T	Hetero	INTERGENIC
SBS	Chr1	13656337	A-G	Hetero	INTERGENIC
SBS	Chr1	14565919	G-C	Hetero	INTERGENIC
SBS	Chr1	20015619	G-A	Hetero	INTERGENIC
SBS	Chr1	25985347	T-A	Homo	INTERGENIC
SBS	Chr1	39230564	C-A	Hetero	INTERGENIC
SBS	Chr2	217707	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g003700
SBS	Chr2	3681906	G-A	Hetero	INTRON
SBS	Chr2	4742888	T-C	Homo	INTRON
SBS	Chr2	15328227	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g159800
SBS	Chr3	1449769	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr3	3064048	C-T	Hetero	UTR_3_PRIME
SBS	Chr3	12821704	G-C	Homo	INTRON
SBS	Chr3	17652710	C-T	Hetero	INTERGENIC
SBS	Chr3	19864578	C-T	Hetero	INTERGENIC
SBS	Chr3	31511893	T-A	Homo	INTERGENIC
SBS	Chr4	2293688	T-A	Hetero	INTERGENIC
SBS	Chr4	9485757	G-T	Hetero	INTERGENIC
SBS	Chr4	10573680	T-C	Hetero	INTERGENIC
SBS	Chr4	13259864	C-A	Hetero	INTERGENIC
SBS	Chr4	16146996	C-T	Hetero	INTERGENIC
SBS	Chr4	23483081	T-A	Homo	INTERGENIC
SBS	Chr5	650247	C-T	Hetero	UTR_5_PRIME
SBS	Chr5	12208052	C-A	Hetero	INTERGENIC
SBS	Chr6	3544504	A-G	Hetero	INTERGENIC
SBS	Chr6	6026780	T-C	Homo	INTRON
SBS	Chr6	9050924	G-A	Hetero	INTERGENIC
SBS	Chr6	10125000	C-T	Hetero	INTRON
SBS	Chr6	24252042	G-A	Hetero	INTERGENIC
SBS	Chr6	26742311	T-C	Hetero	UTR_3_PRIME
SBS	Chr7	6426684	C-T	Homo	INTERGENIC
SBS	Chr7	8011949	C-T	Homo	INTERGENIC
SBS	Chr7	8307782	G-T	Hetero	INTERGENIC
SBS	Chr7	11926790	G-A	Hetero	INTERGENIC
SBS	Chr7	26541586	G-T	Hetero	INTERGENIC
SBS	Chr8	3412344	T-C	Homo	INTERGENIC
SBS	Chr8	8858192	A-G	Homo	INTERGENIC
SBS	Chr8	9645638	T-A	Homo	INTERGENIC
SBS	Chr8	14019511	C-G	Homo	UTR_5_PRIME
SBS	Chr8	24949264	G-A	Hetero	INTERGENIC
SBS	Chr8	24949265	G-T	Hetero	INTERGENIC
SBS	Chr8	26001661	T-A	Hetero	INTERGENIC
SBS	Chr8	26001665	G-A	Hetero	INTERGENIC
SBS	Chr9	3361085	G-A	Homo	INTERGENIC
SBS	Chr9	17692090	T-A	Hetero	INTERGENIC
SBS	Chr9	19550461	C-T	Hetero	INTERGENIC
SBS	Chr9	21972770	C-T	Hetero	INTERGENIC
SBS	Chr10	11204787	G-T	Homo	INTERGENIC
SBS	Chr10	18100743	A-G	Hetero	INTERGENIC
SBS	Chr11	2409213	C-T	Hetero	INTERGENIC
SBS	Chr11	6641829	A-T	Hetero	INTRON
SBS	Chr11	25892725	T-G	Hetero	INTERGENIC
SBS	Chr12	4442564	C-G	Homo	INTERGENIC
SBS	Chr12	11387850	G-A	Hetero	INTERGENIC
SBS	Chr12	21506554	G-A	Hetero	INTERGENIC
SBS	Chr12	22476135	C-T	Homo	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	95794	95796	2
Deletion	Chr5	797378	797385	7	OsKitaake05g009700
Deletion	Chr6	1513113	1513115	2
Deletion	Chr1	4053688	4054009	321
Deletion	Chr7	4270604	4270614	10
Deletion	Chr1	9330585	9330587	2
Deletion	Chr5	10973960	10973961	1
Deletion	Chr8	11250169	11250173	4
Deletion	Chr3	15342486	15342489	3
Deletion	Chr2	15582630	15582631	1
Deletion	Chr3	15857579	15857581	2
Deletion	Chr6	15947631	15947635	4
Deletion	Chr8	16319001	16336000	16999	OsKitaake08g125350
Deletion	Chr3	25901312	25901322	10
Deletion	Chr6	27205001	27259000	53999	4
Deletion	Chr4	27518311	27518313	2
Deletion	Chr11	27563269	27563270	1
Deletion	Chr4	27585372	27585373	1
Deletion	Chr7	28652947	28652956	9
Deletion	Chr4	30827917	30827918	1
Deletion	Chr2	32347475	32347479	4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	4157248	Chr6	4040892	OsKitaake12g056800
Translocation	Chr12	4185837	Chr6	4040891	OsKitaake12g057400
Translocation	Chr12	4194659	Chr5	10585377
Translocation	Chr12	4195624	Chr11	3535532	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes