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| Mutant Information |
|---|
| Mutant Name | FN3456-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3456-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 29
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 7448792 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 16113507 | T-G | Homo | INTERGENIC | |
| SBS | Chr1 | 30337034 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 4450074 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 10130904 | G-C | Homo | INTERGENIC | |
| SBS | Chr2 | 14908535 | C-G | Homo | INTERGENIC | |
| SBS | Chr2 | 26892193 | G-A | Homo | INTRON | |
| SBS | Chr3 | 15634415 | T-A | Homo | INTERGENIC | |
| SBS | Chr3 | 29596339 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 34195643 | G-C | Homo | INTERGENIC | |
| SBS | Chr4 | 2620280 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 9295831 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 16125734 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 17025478 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 30462840 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 3848813 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 7805023 | C-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 11309331 | C-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 18245337 | C-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 26245099 | G-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 3751045 | G-C | Homo | INTERGENIC | |
| SBS | Chr8 | 3751047 | T-A | Homo | INTERGENIC | |
| SBS | Chr8 | 3751048 | G-T | Homo | INTERGENIC | |
| SBS | Chr8 | 28919820 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 21207485 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake09g183700 |
| SBS | Chr11 | 27025521 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 27025525 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 6175832 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 9835097 | A-T | Hetero | INTERGENIC |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr11 | 540710 | 540714 | 4 | OsKitaake11g006200 |
| Deletion | Chr8 | 886957 | 886971 | 14 | |
| Deletion | Chr12 | 1485718 | 1486109 | 391 | |
| Deletion | Chr4 | 2717817 | 2717819 | 2 | |
| Deletion | Chr1 | 12157182 | 12157199 | 17 | |
| Deletion | Chr6 | 15756872 | 15757027 | 155 | |
| Deletion | Chr1 | 16185101 | 16185106 | 5 | |
| Deletion | Chr4 | 17036001 | 17129000 | 92999 | 5 |
| Deletion | Chr10 | 17477001 | 17487000 | 9999 | OsKitaake10g119300 |
| Deletion | Chr11 | 19113371 | 19113377 | 6 | |
| Deletion | Chr1 | 20671813 | 20671814 | 1 | OsKitaake01g202500 |
| Deletion | Chr9 | 22315465 | 22315470 | 5 | |
| Deletion | Chr8 | 28506548 | 28506550 | 2 | |
| Deletion | Chr3 | 32245001 | 32353000 | 107999 | 8 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 26912875 | 26912879 | 3 | |
| Insertion | Chr7 | 8498072 | 8498074 | 1 | |
| Insertion | Chr10 | 8267973 | 8267982 | 8 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr7 | 19244417 | 19508504 | OsKitaake07g156100 |
| Inversion | Chr7 | 19244425 | 19508504 | OsKitaake07g156100 |
Translocations: 9
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr9 | 1672271 | Chr3 | 33777498 | |
| Translocation | Chr9 | 1672504 | Chr3 | 9689988 | OsKitaake03g132000 |
| Translocation | Chr10 | 19559449 | Chr3 | 32874818 | OsKitaake10g143800 |
| Translocation | Chr10 | 19559451 | Chr3 | 32874367 | OsKitaake10g143800 |
| Translocation | Chr10 | 19614621 | Chr1 | 13766158 | OsKitaake01g159700 |
| Translocation | Chr10 | 19614704 | Chr1 | 13765789 | OsKitaake01g159700 |
| Translocation | Chr4 | 20194647 | Chr3 | 33787572 | |
| Translocation | Chr4 | 20194660 | Chr3 | 33787812 | |
| Translocation | Chr4 | 28967621 | Chr1 | 13766182 | OsKitaake01g159700 |