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Mutant Information

Mutant Name	FN3457-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3457-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 28

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11422178 A-G Homo NON_SYNONYMOUS_CODING OsKitaake01g139600
SBS Chr1 12239824 G-A Homo INTERGENIC
SBS Chr1 13372432 C-T Hetero INTERGENIC
SBS Chr1 20277514 C-A Hetero INTERGENIC
SBS Chr1 23141099 T-C Homo INTERGENIC
SBS Chr1 37914101 A-G Hetero INTERGENIC
SBS Chr2 4303402 G-C Hetero INTERGENIC
SBS Chr2 24841542 A-G Hetero INTRON
SBS Chr3 7327049 C-A Hetero INTRON
SBS Chr3 18030318 A-G Hetero INTERGENIC
SBS Chr3 26115951 T-C Hetero INTERGENIC
SBS Chr4 35607731 T-G Homo NON_SYNONYMOUS_CODING OsKitaake04g303900
SBS Chr5 4983543 G-A Homo INTERGENIC
SBS Chr6 11258466 C-T Homo UTR_5_PRIME
SBS Chr6 14060176 A-T Hetero INTERGENIC
SBS Chr6 15801605 C-T Homo INTERGENIC
SBS Chr6 17023818 G-A Homo INTERGENIC
SBS Chr6 17988977 C-G Homo UTR_3_PRIME
SBS Chr6 20533437 G-T Hetero UTR_3_PRIME
SBS Chr7 21940358 G-C Hetero INTRON
SBS Chr8 13211169 C-T Hetero INTERGENIC
SBS Chr9 13195534 T-C Homo INTERGENIC
SBS Chr10 14763211 C-T Hetero INTERGENIC
SBS Chr11 8723313 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g094200
SBS Chr11 9246068 G-A Hetero INTERGENIC
SBS Chr11 14998564 C-T Hetero INTERGENIC
SBS Chr11 20936012 G-A Hetero INTERGENIC
SBS Chr12 9915267 C-T Hetero INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 429031 429032 1
Deletion Chr1 589236 589239 3
Deletion Chr4 2923980 2923988 8
Deletion Chr5 6050309 6050310 1
Deletion Chr11 12671141 12671142 1
Deletion Chr2 13105098 13105100 2
Deletion Chr12 15756608 15756610 2 OsKitaake12g121700
Deletion Chr5 26376807 26376808 1 OsKitaake05g233100
Deletion Chr6 27922001 27933000 10999 OsKitaake06g253400

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 30616456 30616464 7
Insertion Chr5 27824638 27824640 1
Insertion Chr6 13003201 13003204 2
Insertion Chr9 12154206 12154209 2
Insertion Chr9 19991864 19991867 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11422178	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g139600
SBS	Chr1	12239824	G-A	Homo	INTERGENIC
SBS	Chr1	13372432	C-T	Hetero	INTERGENIC
SBS	Chr1	20277514	C-A	Hetero	INTERGENIC
SBS	Chr1	23141099	T-C	Homo	INTERGENIC
SBS	Chr1	37914101	A-G	Hetero	INTERGENIC
SBS	Chr2	4303402	G-C	Hetero	INTERGENIC
SBS	Chr2	24841542	A-G	Hetero	INTRON
SBS	Chr3	7327049	C-A	Hetero	INTRON
SBS	Chr3	18030318	A-G	Hetero	INTERGENIC
SBS	Chr3	26115951	T-C	Hetero	INTERGENIC
SBS	Chr4	35607731	T-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g303900
SBS	Chr5	4983543	G-A	Homo	INTERGENIC
SBS	Chr6	11258466	C-T	Homo	UTR_5_PRIME
SBS	Chr6	14060176	A-T	Hetero	INTERGENIC
SBS	Chr6	15801605	C-T	Homo	INTERGENIC
SBS	Chr6	17023818	G-A	Homo	INTERGENIC
SBS	Chr6	17988977	C-G	Homo	UTR_3_PRIME
SBS	Chr6	20533437	G-T	Hetero	UTR_3_PRIME
SBS	Chr7	21940358	G-C	Hetero	INTRON
SBS	Chr8	13211169	C-T	Hetero	INTERGENIC
SBS	Chr9	13195534	T-C	Homo	INTERGENIC
SBS	Chr10	14763211	C-T	Hetero	INTERGENIC
SBS	Chr11	8723313	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g094200
SBS	Chr11	9246068	G-A	Hetero	INTERGENIC
SBS	Chr11	14998564	C-T	Hetero	INTERGENIC
SBS	Chr11	20936012	G-A	Hetero	INTERGENIC
SBS	Chr12	9915267	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	429031	429032	1
Deletion	Chr1	589236	589239	3
Deletion	Chr4	2923980	2923988	8
Deletion	Chr5	6050309	6050310	1
Deletion	Chr11	12671141	12671142	1
Deletion	Chr2	13105098	13105100	2
Deletion	Chr12	15756608	15756610	2	OsKitaake12g121700
Deletion	Chr5	26376807	26376808	1	OsKitaake05g233100
Deletion	Chr6	27922001	27933000	10999	OsKitaake06g253400

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes