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| Mutant Information |
|---|
| Mutant Name | FN3459-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3459-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 27
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 22029517 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 31049837 | G-A | Homo | INTRON | |
| SBS | Chr2 | 1701222 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 8950881 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 19776385 | G-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 12580157 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 17724743 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 22436241 | A-T | Homo | INTERGENIC | |
| SBS | Chr3 | 24454533 | G-C | Homo | INTERGENIC | |
| SBS | Chr3 | 25531446 | C-T | Hetero | INTRON | |
| SBS | Chr4 | 18050071 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 27053667 | C-A | Homo | INTERGENIC | |
| SBS | Chr5 | 11531621 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 16598310 | A-T | Homo | INTRON | |
| SBS | Chr5 | 28376035 | G-A | Homo | INTRON | |
| SBS | Chr6 | 20232442 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 6233756 | C-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 23497284 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 28267549 | G-A | Hetero | INTRON | |
| SBS | Chr9 | 8421158 | A-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 4865548 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 12776053 | A-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 23802043 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 1913906 | A-T | Homo | INTERGENIC | |
| SBS | Chr11 | 11406129 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 2948562 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 23319371 | G-A | Hetero | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr1 | 9327437 | 9327439 | 2 | OsKitaake01g119800 |
| Deletion | Chr2 | 10155284 | 10155285 | 1 | OsKitaake02g121901 |
| Deletion | Chr7 | 10453250 | 10453256 | 6 | |
| Deletion | Chr1 | 10482731 | 10482739 | 8 | |
| Deletion | Chr9 | 11002864 | 11002872 | 8 | |
| Deletion | Chr3 | 24445522 | 24445526 | 4 | |
| Deletion | Chr7 | 24567536 | 24567538 | 2 | |
| Deletion | Chr8 | 25909847 | 25909859 | 12 | |
| Deletion | Chr4 | 26051689 | 26051696 | 7 | |
| Deletion | Chr12 | 26721833 | 26721836 | 3 | |
| Deletion | Chr1 | 33846564 | 33846565 | 1 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 9520563 | 9520566 | 2 | |
| Insertion | Chr7 | 7342559 | 7342561 | 1 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr4 | 18329452 | 18634116 |