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Mutant Information

Mutant Name	FN3460-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3460-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 25875328 T-C Hetero INTERGENIC
SBS Chr1 30493853 T-C Hetero INTERGENIC
SBS Chr1 31223610 A-G Hetero INTERGENIC
SBS Chr1 39382971 T-C Hetero INTERGENIC
SBS Chr1 41206857 A-T Hetero INTERGENIC
SBS Chr2 4359827 C-T Hetero SYNONYMOUS_CODING
SBS Chr2 15020557 A-G Hetero INTERGENIC
SBS Chr2 17969120 G-A Hetero INTERGENIC
SBS Chr3 26650215 C-T Hetero INTERGENIC
SBS Chr3 30345898 C-T Hetero INTERGENIC
SBS Chr3 31676373 C-T Hetero INTRON
SBS Chr3 37355483 C-G Hetero INTERGENIC
SBS Chr4 14546497 C-T Homo INTERGENIC
SBS Chr4 16622148 C-T Homo INTERGENIC
SBS Chr4 18212591 T-C Homo INTERGENIC
SBS Chr4 27893291 T-A Hetero INTERGENIC
SBS Chr4 30658361 C-A Homo INTERGENIC
SBS Chr5 26681358 G-T Homo INTERGENIC
SBS Chr6 7624235 G-A Hetero INTERGENIC
SBS Chr6 16198065 G-T Homo INTERGENIC
SBS Chr6 16574642 G-A Hetero INTERGENIC
SBS Chr6 28845926 G-A Homo INTERGENIC
SBS Chr7 15444624 G-C Hetero INTERGENIC
SBS Chr7 16665826 C-A Hetero INTERGENIC
SBS Chr7 22662729 A-G Hetero INTERGENIC
SBS Chr8 15757004 A-G Hetero INTERGENIC
SBS Chr8 18852877 G-A Homo INTERGENIC
SBS Chr8 23918111 G-A Homo INTERGENIC
SBS Chr9 3546141 C-A Hetero INTERGENIC
SBS Chr9 19968441 C-T Hetero INTERGENIC
SBS Chr10 8179657 G-A Homo INTERGENIC
SBS Chr11 3681358 G-A Hetero INTERGENIC
SBS Chr11 20034961 T-G Homo INTERGENIC
SBS Chr12 8621242 G-T Hetero INTERGENIC
SBS Chr12 21765234 C-T Hetero INTERGENIC

Deletions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 7706750 7706752 2
Deletion Chr4 10775780 10775781 1
Deletion Chr2 12644001 12760000 115999 9
Deletion Chr7 25807700 25807707 7
Deletion Chr1 26718310 26718313 3
Deletion Chr11 28711075 28711077 2

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 4051249 4051253 3
Insertion Chr3 22175582 22175605 22 OsKitaake03g241635

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 3106174 3368855 OsKitaake02g044400
Inversion Chr2 3106180 3368877 OsKitaake02g044400
Inversion Chr10 19128517 19584917 OsKitaake10g144200
Inversion Chr10 19128522 19584932 OsKitaake10g144200

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 6880671 Chr2 12756272 OsKitaake02g142500
Translocation Chr9 6884422 Chr2 12757518 OsKitaake02g142500
Translocation Chr11 10559170 Chr3 6462846 OsKitaake11g104900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	25875328	T-C	Hetero	INTERGENIC
SBS	Chr1	30493853	T-C	Hetero	INTERGENIC
SBS	Chr1	31223610	A-G	Hetero	INTERGENIC
SBS	Chr1	39382971	T-C	Hetero	INTERGENIC
SBS	Chr1	41206857	A-T	Hetero	INTERGENIC
SBS	Chr2	4359827	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr2	15020557	A-G	Hetero	INTERGENIC
SBS	Chr2	17969120	G-A	Hetero	INTERGENIC
SBS	Chr3	26650215	C-T	Hetero	INTERGENIC
SBS	Chr3	30345898	C-T	Hetero	INTERGENIC
SBS	Chr3	31676373	C-T	Hetero	INTRON
SBS	Chr3	37355483	C-G	Hetero	INTERGENIC
SBS	Chr4	14546497	C-T	Homo	INTERGENIC
SBS	Chr4	16622148	C-T	Homo	INTERGENIC
SBS	Chr4	18212591	T-C	Homo	INTERGENIC
SBS	Chr4	27893291	T-A	Hetero	INTERGENIC
SBS	Chr4	30658361	C-A	Homo	INTERGENIC
SBS	Chr5	26681358	G-T	Homo	INTERGENIC
SBS	Chr6	7624235	G-A	Hetero	INTERGENIC
SBS	Chr6	16198065	G-T	Homo	INTERGENIC
SBS	Chr6	16574642	G-A	Hetero	INTERGENIC
SBS	Chr6	28845926	G-A	Homo	INTERGENIC
SBS	Chr7	15444624	G-C	Hetero	INTERGENIC
SBS	Chr7	16665826	C-A	Hetero	INTERGENIC
SBS	Chr7	22662729	A-G	Hetero	INTERGENIC
SBS	Chr8	15757004	A-G	Hetero	INTERGENIC
SBS	Chr8	18852877	G-A	Homo	INTERGENIC
SBS	Chr8	23918111	G-A	Homo	INTERGENIC
SBS	Chr9	3546141	C-A	Hetero	INTERGENIC
SBS	Chr9	19968441	C-T	Hetero	INTERGENIC
SBS	Chr10	8179657	G-A	Homo	INTERGENIC
SBS	Chr11	3681358	G-A	Hetero	INTERGENIC
SBS	Chr11	20034961	T-G	Homo	INTERGENIC
SBS	Chr12	8621242	G-T	Hetero	INTERGENIC
SBS	Chr12	21765234	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	7706750	7706752	2
Deletion	Chr4	10775780	10775781	1
Deletion	Chr2	12644001	12760000	115999	9
Deletion	Chr7	25807700	25807707	7
Deletion	Chr1	26718310	26718313	3
Deletion	Chr11	28711075	28711077	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	3106174	3368855	OsKitaake02g044400
Inversion	Chr2	3106180	3368877	OsKitaake02g044400
Inversion	Chr10	19128517	19584917	OsKitaake10g144200
Inversion	Chr10	19128522	19584932	OsKitaake10g144200

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes