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Mutant Information

Mutant Name	FN3462-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3462-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 16489092 C-T Homo INTERGENIC
SBS Chr1 39400069 C-A Hetero INTERGENIC
SBS Chr2 12581843 G-A Homo INTERGENIC
SBS Chr2 12581844 G-A Homo INTERGENIC
SBS Chr2 13695317 C-A Homo INTERGENIC
SBS Chr2 25700493 G-T Homo INTERGENIC
SBS Chr2 30885458 T-A Homo INTERGENIC
SBS Chr3 12757480 C-T Hetero INTRON
SBS Chr3 23492594 C-T Homo INTRON
SBS Chr3 24932508 A-G Homo INTERGENIC
SBS Chr3 35731826 C-T Hetero INTERGENIC
SBS Chr4 16288643 G-T Hetero INTERGENIC
SBS Chr4 21485220 G-T Hetero INTERGENIC
SBS Chr5 3377984 C-G Homo INTERGENIC
SBS Chr5 10828804 C-A Hetero INTERGENIC
SBS Chr7 8362154 C-T Hetero INTERGENIC
SBS Chr7 21892465 G-A Homo NON_SYNONYMOUS_CODING OsKitaake07g183600
SBS Chr8 5391199 T-C Homo UTR_3_PRIME
SBS Chr9 77018 C-T Hetero INTERGENIC
SBS Chr9 3124819 G-C Hetero INTERGENIC
SBS Chr9 11313323 A-C Homo INTERGENIC
SBS Chr9 15683470 A-T Homo INTERGENIC
SBS Chr9 19459724 G-A Homo INTRON
SBS Chr10 4605397 G-C Hetero INTERGENIC
SBS Chr10 4963616 C-T Hetero INTERGENIC
SBS Chr10 5643942 A-T Hetero INTERGENIC
SBS Chr10 5710406 A-G Hetero INTERGENIC
SBS Chr11 6056755 A-G Homo INTERGENIC
SBS Chr12 24208464 T-C Homo INTERGENIC
SBS Chr12 24599653 C-T Homo INTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 1726571 1726573 2
Deletion Chr2 2364478 2365056 578
Deletion Chr8 3346873 3346895 22
Deletion Chr12 7999508 7999510 2
Deletion Chr1 8811059 8811069 10
Deletion Chr5 10304566 10304567 1
Deletion Chr4 11180001 11202000 21999
Deletion Chr3 12282429 12282432 3
Deletion Chr9 13127487 13127504 17
Deletion Chr5 15206256 15206261 5
Deletion Chr9 15683223 15683225 2
Deletion Chr5 16545209 16545213 4
Deletion Chr2 18604213 18604218 5
Deletion Chr6 18923336 18923344 8
Deletion Chr9 19903524 19903542 18
Deletion Chr3 23872001 23970000 97999 3
Deletion Chr2 23879521 23879528 7 OsKitaake02g234000
Deletion Chr12 24320627 24320631 4
Deletion Chr4 29094321 29094323 2
Deletion Chr2 30732694 30732715 21

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 7796529 7796532 2
Insertion Chr12 16857059 16857061 1

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 34382481 34777714 2

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 11179293 Chr2 34382494 OsKitaake02g357500
Translocation Chr10 14171022 Chr2 34777731 OsKitaake02g362500
Translocation Chr10 14171038 Chr2 34778072 OsKitaake02g362500
Translocation Chr4 19587191 Chr2 34361292 2
Translocation Chr4 19587200 Chr2 34776937 OsKitaake04g101300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16489092	C-T	Homo	INTERGENIC
SBS	Chr1	39400069	C-A	Hetero	INTERGENIC
SBS	Chr2	12581843	G-A	Homo	INTERGENIC
SBS	Chr2	12581844	G-A	Homo	INTERGENIC
SBS	Chr2	13695317	C-A	Homo	INTERGENIC
SBS	Chr2	25700493	G-T	Homo	INTERGENIC
SBS	Chr2	30885458	T-A	Homo	INTERGENIC
SBS	Chr3	12757480	C-T	Hetero	INTRON
SBS	Chr3	23492594	C-T	Homo	INTRON
SBS	Chr3	24932508	A-G	Homo	INTERGENIC
SBS	Chr3	35731826	C-T	Hetero	INTERGENIC
SBS	Chr4	16288643	G-T	Hetero	INTERGENIC
SBS	Chr4	21485220	G-T	Hetero	INTERGENIC
SBS	Chr5	3377984	C-G	Homo	INTERGENIC
SBS	Chr5	10828804	C-A	Hetero	INTERGENIC
SBS	Chr7	8362154	C-T	Hetero	INTERGENIC
SBS	Chr7	21892465	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g183600
SBS	Chr8	5391199	T-C	Homo	UTR_3_PRIME
SBS	Chr9	77018	C-T	Hetero	INTERGENIC
SBS	Chr9	3124819	G-C	Hetero	INTERGENIC
SBS	Chr9	11313323	A-C	Homo	INTERGENIC
SBS	Chr9	15683470	A-T	Homo	INTERGENIC
SBS	Chr9	19459724	G-A	Homo	INTRON
SBS	Chr10	4605397	G-C	Hetero	INTERGENIC
SBS	Chr10	4963616	C-T	Hetero	INTERGENIC
SBS	Chr10	5643942	A-T	Hetero	INTERGENIC
SBS	Chr10	5710406	A-G	Hetero	INTERGENIC
SBS	Chr11	6056755	A-G	Homo	INTERGENIC
SBS	Chr12	24208464	T-C	Homo	INTERGENIC
SBS	Chr12	24599653	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	1726571	1726573	2
Deletion	Chr2	2364478	2365056	578
Deletion	Chr8	3346873	3346895	22
Deletion	Chr12	7999508	7999510	2
Deletion	Chr1	8811059	8811069	10
Deletion	Chr5	10304566	10304567	1
Deletion	Chr4	11180001	11202000	21999
Deletion	Chr3	12282429	12282432	3
Deletion	Chr9	13127487	13127504	17
Deletion	Chr5	15206256	15206261	5
Deletion	Chr9	15683223	15683225	2
Deletion	Chr5	16545209	16545213	4
Deletion	Chr2	18604213	18604218	5
Deletion	Chr6	18923336	18923344	8
Deletion	Chr9	19903524	19903542	18
Deletion	Chr3	23872001	23970000	97999	3
Deletion	Chr2	23879521	23879528	7	OsKitaake02g234000
Deletion	Chr12	24320627	24320631	4
Deletion	Chr4	29094321	29094323	2
Deletion	Chr2	30732694	30732715	21

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	34382481	34777714	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes