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Mutant Information

Mutant Name	FN3463-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3463-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 27

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 24718145 C-A Hetero INTERGENIC
SBS Chr2 15626562 G-A Hetero INTERGENIC
SBS Chr2 28702962 G-A Homo INTRON
SBS Chr3 11142617 C-G Hetero INTERGENIC
SBS Chr3 22669337 T-C Homo INTERGENIC
SBS Chr4 4735679 G-C Homo INTERGENIC
SBS Chr4 17076829 T-C Homo NON_SYNONYMOUS_CODING OsKitaake04g083350
SBS Chr5 8725713 T-C Hetero INTERGENIC
SBS Chr5 9472109 T-C Hetero INTERGENIC
SBS Chr5 12152179 C-T Hetero INTERGENIC
SBS Chr5 14632606 T-C Hetero INTERGENIC
SBS Chr6 9258188 T-A Homo INTERGENIC
SBS Chr6 24767491 A-T Homo INTERGENIC
SBS Chr7 6318164 C-T Hetero INTERGENIC
SBS Chr7 12547558 C-A Hetero INTRON
SBS Chr8 8277457 G-A Hetero INTERGENIC
SBS Chr8 26805422 T-A Homo INTERGENIC
SBS Chr9 6360451 C-A Hetero INTERGENIC
SBS Chr10 1765187 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake10g012800
SBS Chr10 1765188 G-A Hetero SYNONYMOUS_CODING
SBS Chr10 2132506 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake10g016600
SBS Chr10 3902567 C-A Hetero INTERGENIC
SBS Chr10 7291982 C-T Hetero INTERGENIC
SBS Chr10 18347550 G-A Hetero INTERGENIC
SBS Chr11 3027790 G-A Hetero INTERGENIC
SBS Chr11 12916632 T-C Hetero INTERGENIC
SBS Chr12 21822773 G-A Hetero INTERGENIC

Deletions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 606904 606909 5
Deletion Chr8 4294256 4294260 4
Deletion Chr12 10539333 10539334 1
Deletion Chr1 15618001 15643000 24999
Deletion Chr9 20384426 20384431 5
Deletion Chr11 23499864 23499941 77
Deletion Chr4 29449515 29449519 4

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 13240544 13240547 2
Insertion Chr12 26049535 26049537 1

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	24718145	C-A	Hetero	INTERGENIC
SBS	Chr2	15626562	G-A	Hetero	INTERGENIC
SBS	Chr2	28702962	G-A	Homo	INTRON
SBS	Chr3	11142617	C-G	Hetero	INTERGENIC
SBS	Chr3	22669337	T-C	Homo	INTERGENIC
SBS	Chr4	4735679	G-C	Homo	INTERGENIC
SBS	Chr4	17076829	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g083350
SBS	Chr5	8725713	T-C	Hetero	INTERGENIC
SBS	Chr5	9472109	T-C	Hetero	INTERGENIC
SBS	Chr5	12152179	C-T	Hetero	INTERGENIC
SBS	Chr5	14632606	T-C	Hetero	INTERGENIC
SBS	Chr6	9258188	T-A	Homo	INTERGENIC
SBS	Chr6	24767491	A-T	Homo	INTERGENIC
SBS	Chr7	6318164	C-T	Hetero	INTERGENIC
SBS	Chr7	12547558	C-A	Hetero	INTRON
SBS	Chr8	8277457	G-A	Hetero	INTERGENIC
SBS	Chr8	26805422	T-A	Homo	INTERGENIC
SBS	Chr9	6360451	C-A	Hetero	INTERGENIC
SBS	Chr10	1765187	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g012800
SBS	Chr10	1765188	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr10	2132506	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g016600
SBS	Chr10	3902567	C-A	Hetero	INTERGENIC
SBS	Chr10	7291982	C-T	Hetero	INTERGENIC
SBS	Chr10	18347550	G-A	Hetero	INTERGENIC
SBS	Chr11	3027790	G-A	Hetero	INTERGENIC
SBS	Chr11	12916632	T-C	Hetero	INTERGENIC
SBS	Chr12	21822773	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	606904	606909	5
Deletion	Chr8	4294256	4294260	4
Deletion	Chr12	10539333	10539334	1
Deletion	Chr1	15618001	15643000	24999
Deletion	Chr9	20384426	20384431	5
Deletion	Chr11	23499864	23499941	77
Deletion	Chr4	29449515	29449519	4

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes