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| Mutant Information |
|---|
| Mutant Name | FN3464-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3464-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 38
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 3994610 | T-A | Homo | INTERGENIC | |
| SBS | Chr2 | 27475594 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 30464747 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 7571520 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 10423598 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 15019727 | A-G | Homo | INTRON | |
| SBS | Chr3 | 36371852 | A-C | Homo | INTERGENIC | |
| SBS | Chr4 | 12351851 | T-C | Homo | INTERGENIC | |
| SBS | Chr4 | 16253721 | C-G | Homo | INTERGENIC | |
| SBS | Chr4 | 17915605 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 2847180 | T-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 3164918 | C-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake05g037900 |
| SBS | Chr5 | 23964288 | G-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 10006486 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 14542692 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 22133406 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 22922637 | G-T | Homo | INTERGENIC | |
| SBS | Chr7 | 3887935 | C-G | Hetero | START_GAINED | |
| SBS | Chr7 | 26632876 | T-C | Homo | INTRON | |
| SBS | Chr8 | 10507305 | G-C | Homo | INTERGENIC | |
| SBS | Chr8 | 25122530 | A-G | Hetero | INTRON | |
| SBS | Chr9 | 8172852 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 21530419 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 3899787 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 10804561 | C-G | Homo | INTERGENIC | |
| SBS | Chr11 | 14578510 | A-G | Homo | INTERGENIC | |
| SBS | Chr11 | 18369528 | T-C | Homo | INTERGENIC | |
| SBS | Chr11 | 27264530 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 28299779 | A-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 28957076 | A-T | Homo | INTERGENIC | |
| SBS | Chr11 | 28957089 | T-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 28957119 | T-C | Homo | INTERGENIC | |
| SBS | Chr12 | 1385313 | A-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake12g020600 |
| SBS | Chr12 | 5683142 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 7576206 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 19993997 | C-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 21938032 | C-T | Hetero | INTRON | |
| SBS | Chr12 | 25592106 | C-T | Hetero | INTERGENIC |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 3301001 | 3420000 | 118999 | 19 |
| Deletion | Chr10 | 3928001 | 3958000 | 29999 | 2 |
| Deletion | Chr6 | 4312880 | 4312881 | 1 | |
| Deletion | Chr6 | 10695247 | 10695254 | 7 | |
| Deletion | Chr4 | 17914813 | 17914822 | 9 | |
| Deletion | Chr4 | 21454163 | 21454194 | 31 | OsKitaake04g120101 |
| Deletion | Chr11 | 22523000 | 22523004 | 4 | |
| Deletion | Chr7 | 23600549 | 23600554 | 5 | |
| Deletion | Chr7 | 24838880 | 24838883 | 3 | |
| Deletion | Chr4 | 25071989 | 25071999 | 10 | |
| Deletion | Chr2 | 33411098 | 33411103 | 5 | |
| Deletion | Chr1 | 43691615 | 43691616 | 1 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 18217548 | 18217553 | 4 | |
| Insertion | Chr8 | 8353839 | 8353843 | 3 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr4 | 28700663 | Chr1 | 34643230 | OsKitaake01g363601 |
| Translocation | Chr4 | 28700683 | Chr1 | 34489561 |