Search Kitaake

Mutant Information

Mutant Name	FN3465-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3465-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1967912 T-A Hetero INTERGENIC
SBS Chr1 2882923 C-T Hetero SYNONYMOUS_CODING
SBS Chr1 7316481 A-T Hetero INTERGENIC
SBS Chr1 39686960 G-T Homo NON_SYNONYMOUS_CODING OsKitaake01g428700
SBS Chr2 20606597 C-A Homo INTERGENIC
SBS Chr2 30516885 G-A Hetero INTERGENIC
SBS Chr2 30516886 C-A Hetero INTERGENIC
SBS Chr2 30516887 A-C Hetero INTERGENIC
SBS Chr2 34069729 A-T Hetero INTERGENIC
SBS Chr3 3273941 T-A Hetero INTERGENIC
SBS Chr3 7373019 G-A Hetero INTERGENIC
SBS Chr3 9943590 C-T Hetero INTRON
SBS Chr3 30927919 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g324700
SBS Chr4 13650972 G-T Homo INTERGENIC
SBS Chr4 14054977 T-C Homo INTERGENIC
SBS Chr5 13089295 A-T Hetero INTERGENIC
SBS Chr5 29925517 G-A Homo NON_SYNONYMOUS_CODING OsKitaake05g286900
SBS Chr6 17819499 C-A Hetero INTERGENIC
SBS Chr6 19213222 C-T Hetero INTERGENIC
SBS Chr7 11670635 T-G Homo INTERGENIC
SBS Chr7 14674662 G-T Hetero INTERGENIC
SBS Chr7 25235381 A-G Hetero INTERGENIC
SBS Chr8 5736771 G-A Homo INTERGENIC
SBS Chr8 19766526 G-A Hetero INTRON
SBS Chr8 27449183 C-A Hetero INTERGENIC
SBS Chr8 28420862 G-T Hetero INTERGENIC
SBS Chr9 14318421 G-A Hetero INTERGENIC
SBS Chr9 16101597 C-T Hetero INTERGENIC
SBS Chr9 17956107 A-G Hetero INTRON
SBS Chr10 15638240 C-T Homo INTERGENIC
SBS Chr12 8460881 G-A Homo INTERGENIC
SBS Chr12 11631088 G-A Hetero INTERGENIC
SBS Chr12 17208419 G-A Homo INTERGENIC
SBS Chr12 22641068 C-T Hetero INTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 5040331 5040333 2
Deletion Chr2 5189117 5189120 3
Deletion Chr6 10242391 10242393 2
Deletion Chr9 10557630 10557632 2
Deletion Chr4 12996685 12996687 2
Deletion Chr1 14230011 14230013 2
Deletion Chr3 15511412 15511433 21
Deletion Chr9 16210040 16210041 1
Deletion Chr3 16988291 16988295 4
Deletion Chr8 18012476 18012479 3
Deletion Chr6 19228203 19228204 1
Deletion Chr2 19272575 19272583 8
Deletion Chr7 22978556 22978567 11
Deletion Chr4 24796762 24796779 17
Deletion Chr8 27409676 27409693 17
Deletion Chr11 27578930 27578935 5
Deletion Chr11 27723581 27723590 9
Deletion Chr2 30799308 30799311 3
Deletion Chr4 33193920 33193955 35
Deletion Chr2 36609811 36609819 8

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1967912	T-A	Hetero	INTERGENIC
SBS	Chr1	2882923	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr1	7316481	A-T	Hetero	INTERGENIC
SBS	Chr1	39686960	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g428700
SBS	Chr2	20606597	C-A	Homo	INTERGENIC
SBS	Chr2	30516885	G-A	Hetero	INTERGENIC
SBS	Chr2	30516886	C-A	Hetero	INTERGENIC
SBS	Chr2	30516887	A-C	Hetero	INTERGENIC
SBS	Chr2	34069729	A-T	Hetero	INTERGENIC
SBS	Chr3	3273941	T-A	Hetero	INTERGENIC
SBS	Chr3	7373019	G-A	Hetero	INTERGENIC
SBS	Chr3	9943590	C-T	Hetero	INTRON
SBS	Chr3	30927919	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g324700
SBS	Chr4	13650972	G-T	Homo	INTERGENIC
SBS	Chr4	14054977	T-C	Homo	INTERGENIC
SBS	Chr5	13089295	A-T	Hetero	INTERGENIC
SBS	Chr5	29925517	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g286900
SBS	Chr6	17819499	C-A	Hetero	INTERGENIC
SBS	Chr6	19213222	C-T	Hetero	INTERGENIC
SBS	Chr7	11670635	T-G	Homo	INTERGENIC
SBS	Chr7	14674662	G-T	Hetero	INTERGENIC
SBS	Chr7	25235381	A-G	Hetero	INTERGENIC
SBS	Chr8	5736771	G-A	Homo	INTERGENIC
SBS	Chr8	19766526	G-A	Hetero	INTRON
SBS	Chr8	27449183	C-A	Hetero	INTERGENIC
SBS	Chr8	28420862	G-T	Hetero	INTERGENIC
SBS	Chr9	14318421	G-A	Hetero	INTERGENIC
SBS	Chr9	16101597	C-T	Hetero	INTERGENIC
SBS	Chr9	17956107	A-G	Hetero	INTRON
SBS	Chr10	15638240	C-T	Homo	INTERGENIC
SBS	Chr12	8460881	G-A	Homo	INTERGENIC
SBS	Chr12	11631088	G-A	Hetero	INTERGENIC
SBS	Chr12	17208419	G-A	Homo	INTERGENIC
SBS	Chr12	22641068	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	5040331	5040333	2
Deletion	Chr2	5189117	5189120	3
Deletion	Chr6	10242391	10242393	2
Deletion	Chr9	10557630	10557632	2
Deletion	Chr4	12996685	12996687	2
Deletion	Chr1	14230011	14230013	2
Deletion	Chr3	15511412	15511433	21
Deletion	Chr9	16210040	16210041	1
Deletion	Chr3	16988291	16988295	4
Deletion	Chr8	18012476	18012479	3
Deletion	Chr6	19228203	19228204	1
Deletion	Chr2	19272575	19272583	8
Deletion	Chr7	22978556	22978567	11
Deletion	Chr4	24796762	24796779	17
Deletion	Chr8	27409676	27409693	17
Deletion	Chr11	27578930	27578935	5
Deletion	Chr11	27723581	27723590	9
Deletion	Chr2	30799308	30799311	3
Deletion	Chr4	33193920	33193955	35
Deletion	Chr2	36609811	36609819	8

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes