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Mutant Information

Mutant Name	FN3466-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3466-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1977512 C-T Hetero INTRON
SBS Chr1 22398175 T-C Hetero INTERGENIC
SBS Chr1 30360208 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g299400
SBS Chr1 42150333 G-A Hetero INTERGENIC
SBS Chr2 13933515 G-C Homo INTERGENIC
SBS Chr2 19954415 G-A Hetero INTERGENIC
SBS Chr2 29208827 G-A Hetero INTERGENIC
SBS Chr3 477965 G-A Hetero UTR_3_PRIME
SBS Chr3 2884126 G-A Hetero INTERGENIC
SBS Chr3 24231550 A-T Homo INTERGENIC
SBS Chr3 30746575 A-C Hetero INTERGENIC
SBS Chr3 30921312 G-A Homo INTERGENIC
SBS Chr3 30922978 A-T Homo INTERGENIC
SBS Chr3 32305463 A-G Homo INTERGENIC
SBS Chr3 32305465 C-G Homo INTERGENIC
SBS Chr4 26761382 T-C Homo INTERGENIC
SBS Chr5 22745915 T-A Homo INTERGENIC
SBS Chr6 7149962 C-G Hetero INTERGENIC
SBS Chr6 7149963 C-T Hetero INTERGENIC
SBS Chr6 7429971 G-A Hetero INTERGENIC
SBS Chr6 7975754 T-A Hetero INTERGENIC
SBS Chr6 7975755 T-A Hetero INTERGENIC
SBS Chr6 12085201 C-T Hetero INTERGENIC
SBS Chr6 23975457 G-A Hetero INTERGENIC
SBS Chr8 1742324 G-C Hetero INTERGENIC
SBS Chr8 29298618 C-T Homo INTERGENIC
SBS Chr9 3120887 C-G Hetero INTERGENIC
SBS Chr9 4680098 C-G Hetero INTERGENIC
SBS Chr11 7227341 A-G Hetero INTERGENIC
SBS Chr11 12081868 A-G Hetero INTERGENIC
SBS Chr11 17209532 C-A Hetero INTERGENIC
SBS Chr11 17510382 C-G Hetero INTERGENIC
SBS Chr11 19487935 G-A Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 679576 679581 5
Deletion Chr5 1517611 1517613 2
Deletion Chr10 2156001 2261000 104999 13
Deletion Chr5 4279417 4279431 14
Deletion Chr1 6169307 6169309 2
Deletion Chr6 9737187 9737190 3
Deletion Chr6 13085677 13085690 13
Deletion Chr2 13920095 13920098 3
Deletion Chr9 14589343 14589345 2
Deletion Chr10 15481256 15481261 5
Deletion Chr12 18415971 18415974 3
Deletion Chr4 18668141 18668149 8
Deletion Chr9 20297451 20297452 1
Deletion Chr11 22627859 22627864 5
Deletion Chr4 25214046 25214080 34
Deletion Chr2 25928040 25928042 2
Deletion Chr1 35535783 35535787 4

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 22882663 Chr2 30937235 OsKitaake02g315600
Translocation Chr10 22883034 Chr2 30937237 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1977512	C-T	Hetero	INTRON
SBS	Chr1	22398175	T-C	Hetero	INTERGENIC
SBS	Chr1	30360208	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g299400
SBS	Chr1	42150333	G-A	Hetero	INTERGENIC
SBS	Chr2	13933515	G-C	Homo	INTERGENIC
SBS	Chr2	19954415	G-A	Hetero	INTERGENIC
SBS	Chr2	29208827	G-A	Hetero	INTERGENIC
SBS	Chr3	477965	G-A	Hetero	UTR_3_PRIME
SBS	Chr3	2884126	G-A	Hetero	INTERGENIC
SBS	Chr3	24231550	A-T	Homo	INTERGENIC
SBS	Chr3	30746575	A-C	Hetero	INTERGENIC
SBS	Chr3	30921312	G-A	Homo	INTERGENIC
SBS	Chr3	30922978	A-T	Homo	INTERGENIC
SBS	Chr3	32305463	A-G	Homo	INTERGENIC
SBS	Chr3	32305465	C-G	Homo	INTERGENIC
SBS	Chr4	26761382	T-C	Homo	INTERGENIC
SBS	Chr5	22745915	T-A	Homo	INTERGENIC
SBS	Chr6	7149962	C-G	Hetero	INTERGENIC
SBS	Chr6	7149963	C-T	Hetero	INTERGENIC
SBS	Chr6	7429971	G-A	Hetero	INTERGENIC
SBS	Chr6	7975754	T-A	Hetero	INTERGENIC
SBS	Chr6	7975755	T-A	Hetero	INTERGENIC
SBS	Chr6	12085201	C-T	Hetero	INTERGENIC
SBS	Chr6	23975457	G-A	Hetero	INTERGENIC
SBS	Chr8	1742324	G-C	Hetero	INTERGENIC
SBS	Chr8	29298618	C-T	Homo	INTERGENIC
SBS	Chr9	3120887	C-G	Hetero	INTERGENIC
SBS	Chr9	4680098	C-G	Hetero	INTERGENIC
SBS	Chr11	7227341	A-G	Hetero	INTERGENIC
SBS	Chr11	12081868	A-G	Hetero	INTERGENIC
SBS	Chr11	17209532	C-A	Hetero	INTERGENIC
SBS	Chr11	17510382	C-G	Hetero	INTERGENIC
SBS	Chr11	19487935	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	679576	679581	5
Deletion	Chr5	1517611	1517613	2
Deletion	Chr10	2156001	2261000	104999	13
Deletion	Chr5	4279417	4279431	14
Deletion	Chr1	6169307	6169309	2
Deletion	Chr6	9737187	9737190	3
Deletion	Chr6	13085677	13085690	13
Deletion	Chr2	13920095	13920098	3
Deletion	Chr9	14589343	14589345	2
Deletion	Chr10	15481256	15481261	5
Deletion	Chr12	18415971	18415974	3
Deletion	Chr4	18668141	18668149	8
Deletion	Chr9	20297451	20297452	1
Deletion	Chr11	22627859	22627864	5
Deletion	Chr4	25214046	25214080	34
Deletion	Chr2	25928040	25928042	2
Deletion	Chr1	35535783	35535787	4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	22882663	Chr2	30937235	OsKitaake02g315600
Translocation	Chr10	22883034	Chr2	30937237	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes