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Mutant Information

Mutant Name	FN3467-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3467-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 244740 T-C Homo INTERGENIC
SBS Chr1 1292364 G-C Homo INTERGENIC
SBS Chr1 21002541 G-A Homo INTERGENIC
SBS Chr1 22662265 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g216800
SBS Chr1 27273166 C-T Hetero INTERGENIC
SBS Chr1 41925762 A-T Homo INTERGENIC
SBS Chr1 43524012 G-A Homo INTRON
SBS Chr1 44082707 G-A Homo INTRON
SBS Chr2 10894142 T-C Homo INTERGENIC
SBS Chr2 19830364 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g193400
SBS Chr2 20490690 C-T Hetero INTERGENIC
SBS Chr2 31531767 G-A Hetero INTERGENIC
SBS Chr3 13577163 C-T Homo INTERGENIC
SBS Chr3 20988861 G-A Homo UTR_5_PRIME
SBS Chr3 26808883 T-C Homo INTERGENIC
SBS Chr4 16963616 G-T Hetero INTERGENIC
SBS Chr5 13967379 A-T Hetero INTRON
SBS Chr5 19585054 A-G Hetero SYNONYMOUS_CODING
SBS Chr6 12505105 A-G Hetero INTRON
SBS Chr7 23812606 A-G Hetero INTRON
SBS Chr7 28144096 C-T Hetero INTERGENIC
SBS Chr8 1266430 C-A Homo INTERGENIC
SBS Chr8 10740229 C-T Hetero INTERGENIC
SBS Chr8 18093369 C-T Hetero INTERGENIC
SBS Chr9 4172313 C-T Hetero INTERGENIC
SBS Chr9 11752419 G-A Hetero INTERGENIC
SBS Chr9 13195047 G-A Hetero INTERGENIC
SBS Chr9 13823147 G-A Hetero INTERGENIC
SBS Chr11 3852054 C-A Hetero INTERGENIC
SBS Chr11 8684694 A-G Homo INTERGENIC
SBS Chr11 18700885 C-T Homo INTERGENIC
SBS Chr12 18526570 T-C Homo UTR_3_PRIME

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 854623 854627 4
Deletion Chr10 2030142 2030146 4
Deletion Chr1 3102279 3102280 1
Deletion Chr11 3632424 3632435 11
Deletion Chr11 4153465 4153471 6
Deletion Chr12 9906258 9906260 2
Deletion Chr12 9958197 9958204 7
Deletion Chr7 10414703 10414704 1
Deletion Chr2 10896153 10896159 6
Deletion Chr5 11527814 11527816 2
Deletion Chr2 12982801 12982804 3
Deletion Chr5 19072199 19072203 4 OsKitaake05g149200
Deletion Chr10 21148316 21148321 5
Deletion Chr8 21349334 21349345 11 OsKitaake08g160100
Deletion Chr8 22182094 22182105 11
Deletion Chr2 24406001 24433000 26999
Deletion Chr1 29481332 29481333 1
Deletion Chr3 34141996 34142005 9
Deletion Chr1 35887001 35940000 52999 4
Deletion Chr1 36168001 36282000 113999 9

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 11573950 11573953 2
Insertion Chr10 16813093 16813096 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 19609704 19779240 2
Inversion Chr9 19609710 19779246 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	244740	T-C	Homo	INTERGENIC
SBS	Chr1	1292364	G-C	Homo	INTERGENIC
SBS	Chr1	21002541	G-A	Homo	INTERGENIC
SBS	Chr1	22662265	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g216800
SBS	Chr1	27273166	C-T	Hetero	INTERGENIC
SBS	Chr1	41925762	A-T	Homo	INTERGENIC
SBS	Chr1	43524012	G-A	Homo	INTRON
SBS	Chr1	44082707	G-A	Homo	INTRON
SBS	Chr2	10894142	T-C	Homo	INTERGENIC
SBS	Chr2	19830364	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g193400
SBS	Chr2	20490690	C-T	Hetero	INTERGENIC
SBS	Chr2	31531767	G-A	Hetero	INTERGENIC
SBS	Chr3	13577163	C-T	Homo	INTERGENIC
SBS	Chr3	20988861	G-A	Homo	UTR_5_PRIME
SBS	Chr3	26808883	T-C	Homo	INTERGENIC
SBS	Chr4	16963616	G-T	Hetero	INTERGENIC
SBS	Chr5	13967379	A-T	Hetero	INTRON
SBS	Chr5	19585054	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr6	12505105	A-G	Hetero	INTRON
SBS	Chr7	23812606	A-G	Hetero	INTRON
SBS	Chr7	28144096	C-T	Hetero	INTERGENIC
SBS	Chr8	1266430	C-A	Homo	INTERGENIC
SBS	Chr8	10740229	C-T	Hetero	INTERGENIC
SBS	Chr8	18093369	C-T	Hetero	INTERGENIC
SBS	Chr9	4172313	C-T	Hetero	INTERGENIC
SBS	Chr9	11752419	G-A	Hetero	INTERGENIC
SBS	Chr9	13195047	G-A	Hetero	INTERGENIC
SBS	Chr9	13823147	G-A	Hetero	INTERGENIC
SBS	Chr11	3852054	C-A	Hetero	INTERGENIC
SBS	Chr11	8684694	A-G	Homo	INTERGENIC
SBS	Chr11	18700885	C-T	Homo	INTERGENIC
SBS	Chr12	18526570	T-C	Homo	UTR_3_PRIME

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	854623	854627	4
Deletion	Chr10	2030142	2030146	4
Deletion	Chr1	3102279	3102280	1
Deletion	Chr11	3632424	3632435	11
Deletion	Chr11	4153465	4153471	6
Deletion	Chr12	9906258	9906260	2
Deletion	Chr12	9958197	9958204	7
Deletion	Chr7	10414703	10414704	1
Deletion	Chr2	10896153	10896159	6
Deletion	Chr5	11527814	11527816	2
Deletion	Chr2	12982801	12982804	3
Deletion	Chr5	19072199	19072203	4	OsKitaake05g149200
Deletion	Chr10	21148316	21148321	5
Deletion	Chr8	21349334	21349345	11	OsKitaake08g160100
Deletion	Chr8	22182094	22182105	11
Deletion	Chr2	24406001	24433000	26999
Deletion	Chr1	29481332	29481333	1
Deletion	Chr3	34141996	34142005	9
Deletion	Chr1	35887001	35940000	52999	4
Deletion	Chr1	36168001	36282000	113999	9

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	19609704	19779240	2
Inversion	Chr9	19609710	19779246	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes