Search Kitaake

Mutant Information

Mutant Name	FN3468-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3468-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2697507 C-A Hetero INTRON
SBS Chr1 3313781 G-A Hetero INTERGENIC
SBS Chr2 4041600 G-A Homo INTERGENIC
SBS Chr2 7668354 C-G Homo INTERGENIC
SBS Chr2 16806605 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g171500
SBS Chr3 8634744 C-T Hetero INTERGENIC
SBS Chr3 9160971 T-C Hetero INTRON
SBS Chr3 9172537 A-G Hetero INTERGENIC
SBS Chr3 10225429 G-A Homo NON_SYNONYMOUS_CODING OsKitaake03g139700
SBS Chr3 10225696 C-A Homo INTERGENIC
SBS Chr3 10225697 G-A Homo INTERGENIC
SBS Chr3 16731417 A-G Hetero INTERGENIC
SBS Chr3 28933586 G-A Hetero SYNONYMOUS_CODING
SBS Chr3 32156855 T-C Hetero INTERGENIC
SBS Chr5 12937118 C-T Hetero INTERGENIC
SBS Chr6 8575245 C-A Hetero INTERGENIC
SBS Chr6 14912305 G-A Homo INTERGENIC
SBS Chr6 17287692 T-A Homo INTRON
SBS Chr6 18617701 T-G Hetero INTERGENIC
SBS Chr6 20140507 C-A Hetero INTERGENIC
SBS Chr7 10717119 A-T Homo INTERGENIC
SBS Chr8 219690 A-C Homo INTERGENIC
SBS Chr8 220052 T-C Homo INTERGENIC
SBS Chr8 8227051 G-T Hetero INTERGENIC
SBS Chr8 16243254 G-T Hetero INTERGENIC
SBS Chr9 8660528 T-A Hetero INTERGENIC
SBS Chr9 15723042 T-C Hetero INTERGENIC
SBS Chr11 3877952 G-A Hetero INTERGENIC
SBS Chr11 6458431 A-T Hetero INTERGENIC
SBS Chr11 6518900 C-A Hetero SYNONYMOUS_CODING
SBS Chr11 7161687 C-G Hetero INTERGENIC
SBS Chr11 7843544 G-A Hetero START_GAINED
SBS Chr11 15378761 G-A Homo INTERGENIC
SBS Chr11 25677620 A-G Homo INTERGENIC
SBS Chr12 4222486 G-A Hetero INTERGENIC
SBS Chr12 10925598 T-A Homo INTERGENIC
SBS Chr12 12874615 G-A Homo INTERGENIC
SBS Chr12 16124889 G-C Hetero INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 421538 421541 3 OsKitaake10g002800
Deletion Chr4 1528001 1712000 183999 6
Deletion Chr7 9470593 9470602 9
Deletion Chr10 9847304 9847306 2
Deletion Chr2 9962899 9962903 4
Deletion Chr9 14146001 14155000 8999 OsKitaake09g095100
Deletion Chr1 14552260 14552261 1
Deletion Chr3 15756790 15756792 2
Deletion Chr10 17669322 17669330 8 OsKitaake10g121300
Deletion Chr1 20996487 20996493 6
Deletion Chr8 22794748 22794751 3
Deletion Chr10 23111142 23111143 1
Deletion Chr3 29460448 29460457 9
Deletion Chr6 29834400 29834404 4
Deletion Chr3 30863179 30863183 4
Deletion Chr4 34284792 34284796 4
Deletion Chr3 37495373 37495381 8 OsKitaake03g420900
Deletion Chr1 40133005 40133006 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 2897286 2897293 6
Insertion Chr8 25598633 25598636 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2697507	C-A	Hetero	INTRON
SBS	Chr1	3313781	G-A	Hetero	INTERGENIC
SBS	Chr2	4041600	G-A	Homo	INTERGENIC
SBS	Chr2	7668354	C-G	Homo	INTERGENIC
SBS	Chr2	16806605	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g171500
SBS	Chr3	8634744	C-T	Hetero	INTERGENIC
SBS	Chr3	9160971	T-C	Hetero	INTRON
SBS	Chr3	9172537	A-G	Hetero	INTERGENIC
SBS	Chr3	10225429	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g139700
SBS	Chr3	10225696	C-A	Homo	INTERGENIC
SBS	Chr3	10225697	G-A	Homo	INTERGENIC
SBS	Chr3	16731417	A-G	Hetero	INTERGENIC
SBS	Chr3	28933586	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr3	32156855	T-C	Hetero	INTERGENIC
SBS	Chr5	12937118	C-T	Hetero	INTERGENIC
SBS	Chr6	8575245	C-A	Hetero	INTERGENIC
SBS	Chr6	14912305	G-A	Homo	INTERGENIC
SBS	Chr6	17287692	T-A	Homo	INTRON
SBS	Chr6	18617701	T-G	Hetero	INTERGENIC
SBS	Chr6	20140507	C-A	Hetero	INTERGENIC
SBS	Chr7	10717119	A-T	Homo	INTERGENIC
SBS	Chr8	219690	A-C	Homo	INTERGENIC
SBS	Chr8	220052	T-C	Homo	INTERGENIC
SBS	Chr8	8227051	G-T	Hetero	INTERGENIC
SBS	Chr8	16243254	G-T	Hetero	INTERGENIC
SBS	Chr9	8660528	T-A	Hetero	INTERGENIC
SBS	Chr9	15723042	T-C	Hetero	INTERGENIC
SBS	Chr11	3877952	G-A	Hetero	INTERGENIC
SBS	Chr11	6458431	A-T	Hetero	INTERGENIC
SBS	Chr11	6518900	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr11	7161687	C-G	Hetero	INTERGENIC
SBS	Chr11	7843544	G-A	Hetero	START_GAINED
SBS	Chr11	15378761	G-A	Homo	INTERGENIC
SBS	Chr11	25677620	A-G	Homo	INTERGENIC
SBS	Chr12	4222486	G-A	Hetero	INTERGENIC
SBS	Chr12	10925598	T-A	Homo	INTERGENIC
SBS	Chr12	12874615	G-A	Homo	INTERGENIC
SBS	Chr12	16124889	G-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	421538	421541	3	OsKitaake10g002800
Deletion	Chr4	1528001	1712000	183999	6
Deletion	Chr7	9470593	9470602	9
Deletion	Chr10	9847304	9847306	2
Deletion	Chr2	9962899	9962903	4
Deletion	Chr9	14146001	14155000	8999	OsKitaake09g095100
Deletion	Chr1	14552260	14552261	1
Deletion	Chr3	15756790	15756792	2
Deletion	Chr10	17669322	17669330	8	OsKitaake10g121300
Deletion	Chr1	20996487	20996493	6
Deletion	Chr8	22794748	22794751	3
Deletion	Chr10	23111142	23111143	1
Deletion	Chr3	29460448	29460457	9
Deletion	Chr6	29834400	29834404	4
Deletion	Chr3	30863179	30863183	4
Deletion	Chr4	34284792	34284796	4
Deletion	Chr3	37495373	37495381	8	OsKitaake03g420900
Deletion	Chr1	40133005	40133006	1

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes